ImAnno Search Tool

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==ImAnno Search Tools==
==ImAnno Search Tools==
Several searches can be done
Several searches can be done
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#search by the GeneName. You get the corresponding AnnotAct
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===By GeneName, Freetext or SelectComments===
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#search in freetext and select comments
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# search by GeneName. You get the corresponding AnnotAct
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#search AnnotActs
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# Search in freetext and select comments
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##see the clusters of similar AnnoValues
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===With the Annotacts Search Tools===
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##search for the Genes or AnnotActs corresponding to specific combinations of annotation tissues
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# Go to the AnnotActs SearchTool clicking the button
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# First, select some values to define your sieve (within one line we use the union operator)
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REST IS OBSOLETE
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# Select the AND or OR value to do an intersection or a union between lines
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# First, '''Check''' some checkboxes to define your sieve
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# Then click on '''Search''' to display the result
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# Then click on '''Search''' to display the result in the same window, or click on '''Test''' to display the result in an other window
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# Click on '''Save''' to save your sieve in order to do the same Annotact Search in the future
# Click on '''Save''' to save your sieve in order to do the same Annotact Search in the future
# Click on '''See all sieves''' to view all stored sieves
# Click on '''See all sieves''' to view all stored sieves
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[[Image:SearchAnnotact.jpg]]
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** you can edit or delete your sieves
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** check on the right side and click on the Correlation button to see the correlations between the seeves
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===With the ImAnno PipeWork===
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# With the ImAnnoEarGeneListsWithDiaVenn [[PipeWork]] you can mix lists from ImAnno, EGE (the Ear Gene Expression data from Sajan) and gene lists from external website such as Jax, ihr, Sanger.
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# It allows also to create Venn's Diagrams with [http://alnitak.u-strasbg.fr/lbgiki/index.php/DiaVenn DiaVenn]
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%[[Image:SearchAnnotactCACHE.jpg]]

Current revision

Contents

ImAnno Search Tools

Several searches can be done

By GeneName, Freetext or SelectComments

  1. search by GeneName. You get the corresponding AnnotAct
  2. Search in freetext and select comments

With the Annotacts Search Tools

  1. Go to the AnnotActs SearchTool clicking the button
  2. First, select some values to define your sieve (within one line we use the union operator)
  3. Select the AND or OR value to do an intersection or a union between lines
  4. Then click on Search to display the result
  5. Click on Save to save your sieve in order to do the same Annotact Search in the future
  6. Click on See all sieves to view all stored sieves
    • you can edit or delete your sieves
    • check on the right side and click on the Correlation button to see the correlations between the seeves

With the ImAnno PipeWork

  1. With the ImAnnoEarGeneListsWithDiaVenn PipeWork you can mix lists from ImAnno, EGE (the Ear Gene Expression data from Sajan) and gene lists from external website such as Jax, ihr, Sanger.
  2. It allows also to create Venn's Diagrams with DiaVenn

%Image:SearchAnnotactCACHE.jpg

Retrieved from "http://lbgi.fr/WikiGenoret/index.php/ImAnno_Search_Tool"
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