GenePaint Gene Annotation with ImAnno

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==Eye==
==Eye==
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The tissue types which will be annotated are (may 30th 2006 it may have change since) :
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The tissue types which have been annotated are :
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* Neural Retina Inner cell layer
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# Neural Retina Inner neuroblastic layer
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* Neural Retina Outer cell layer
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# Neural Retina Outer neuroblastic layer
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* Lens Central cells
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# Lens Central cells
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* Lens Anterior epithelium
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# Lens Anterior epithelium
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* Cornea Mesothelium
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# Corneal Mesothelium
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* Cornea Surface epithelium
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# Corneal Epithelium
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* Non-corneal surface epithelia Palpebral folds
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# Epithelia Palpebral folds
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* Non-corneal surface epithelia Conjunctival/perioptic epithelium
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# Epithelia Conjunctival/perioptic epithelium
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* Mesenchyme Eyelid mesenchyme
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# Mesenchyme Eyelid
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* Mesenchyme Scleral mesenchyme
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# Mesenchyme Scleral
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* Mesenchyme Condensed perioptic mes. (including prosp. ocular muscles)
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# Mesenchyme Condensed perioptic mes. including ocular muscles
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* Mesenchyme Loose perioptic mes. (including prosp. orbital bone )
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# Mesenchyme Loose perioptic mes. including orbital bone
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* Mesenchyme Retrolenticular mesenchyme
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# Mesenchyme Retrolenticular
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* Mesenchyme Hyaloid plexi
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# Mesenchyme Hyaloid plexi
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* Non-ocular head tissues Facial surface epithelium
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# Non-ocular head tissues Surface epithelium
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* Non-ocular head tissues Facial mesenchyme
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# Non-ocular head tissues Mesenchyme
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* Non-ocular head tissues Facial bone precursors
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# Non-ocular head tissues Muscles
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* Non-ocular head tissues Blood vessels
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# Non-ocular head tissues Bone
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* Other body regions
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# Non-ocular head tissues Vasculatur
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# Other body regions Central nervous system
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# Other body regions Other body regions
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Foreach tissue type you have to select between
Foreach tissue type you have to select between

Revision as of 18:14, 23 January 2012

The website GenePaint provides thousands of the In Situ Hybridization images. These images correspond to the 24 sagittal sections at embryonic day 14.5.

The goal of GenePaint Gene Annotation with ImAnno is to annotate sets of genes provided by GenePaint.

Three projects were launched : eye, teeth and ear

Eye

The tissue types which have been annotated are :

  1. Neural Retina Inner neuroblastic layer
  2. Neural Retina Outer neuroblastic layer
  3. Lens Central cells
  4. Lens Anterior epithelium
  5. Corneal Mesothelium
  6. Corneal Epithelium
  7. Epithelia Palpebral folds
  8. Epithelia Conjunctival/perioptic epithelium
  9. Mesenchyme Eyelid
  10. Mesenchyme Scleral
  11. Mesenchyme Condensed perioptic mes. including ocular muscles
  12. Mesenchyme Loose perioptic mes. including orbital bone
  13. Mesenchyme Retrolenticular
  14. Mesenchyme Hyaloid plexi
  15. Non-ocular head tissues Surface epithelium
  16. Non-ocular head tissues Mesenchyme
  17. Non-ocular head tissues Muscles
  18. Non-ocular head tissues Bone
  19. Non-ocular head tissues Vasculatur
  20. Other body regions Central nervous system
  21. Other body regions Other body regions


Foreach tissue type you have to select between

  • NA
  • Negative
  • Weak
  • Strong

and you can add zero or more keyword

  • patchy
  • spotted
  • regionalized
  • dev nerves

Teeth

Ear

(And other tissues)

Retrieved from "http://lbgi.fr/WikiGenoret/index.php/GenePaint_Gene_Annotation_with_ImAnno"
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