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|- | |- | ||
- | ! | + | !Ontologies |
- | + | ||
|- | |- | ||
- | | | + | PRO/PROEVO |
- | | | + | ! http://www.bioontology.org/wiki/index.php/PRO |
+ | !protein evolutionary families, | ||
+ | |- | ||
+ | multiple endproducts of genes | ||
+ | !in development | ||
+ | |- | ||
+ | Protein Ontology | ||
+ | !http://proteinontology.info/ !protein structure, function | ||
+ | !implementation | ||
+ | |- | ||
+ | RnaO | ||
+ | !http://roc.bgsu.edu/ | ||
+ | !RNA sequence, structure, motifs, alignments | ||
+ | !in development | ||
+ | |- | ||
+ | GO | ||
+ | ! implementation | ||
+ | |- | ||
+ | SO | ||
+ | ! implementation | ||
+ | |- | ||
+ | PATO | ||
+ | !http://www.bioontology.org/wiki/index.php/PATO | ||
+ | !phenotypic and trait ontology | ||
+ | implementation | ||
+ | |- | ||
+ | MAO | ||
+ | !http://bips.u-strasbg.fr/LBGI/MAO/mao.html | ||
+ | !multiple alignments of DNA, | ||
+ | |- | ||
+ | RNA and protein sequences and structures | ||
+ | !implementation | ||
+ | |- | ||
+ | NCBI Taxonomy | ||
+ | !http://www.ncbi.nlm.nih.gov/Taxonomy/ | ||
+ | !Organismal classification, genetic code | ||
+ | !used widely | ||
+ | |- | ||
+ | Data formats, | ||
+ | ! database schemas | ||
+ | |- | ||
+ | NCBI data model http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML | ||
+ | !sequences, alignments, annotations used at NCBI | ||
|} | |} |
Revision as of 14:30, 9 April 2008
|- !Ontologies |- PRO/PROEVO ! http://www.bioontology.org/wiki/index.php/PRO !protein evolutionary families, |- multiple endproducts of genes !in development |- Protein Ontology !http://proteinontology.info/ !protein structure, function !implementation |- RnaO !http://roc.bgsu.edu/ !RNA sequence, structure, motifs, alignments !in development |- GO ! implementation |- SO ! implementation |- PATO !http://www.bioontology.org/wiki/index.php/PATO !phenotypic and trait ontology implementation |- MAO !http://bips.u-strasbg.fr/LBGI/MAO/mao.html !multiple alignments of DNA, |- RNA and protein sequences and structures !implementation |- NCBI Taxonomy !http://www.ncbi.nlm.nih.gov/Taxonomy/ !Organismal classification, genetic code !used widely |- Data formats, ! database schemas |- NCBI data model http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML !sequences, alignments, annotations used at NCBI |}