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!protein evolutionary families,
!protein evolutionary families,
|-
|-
-
multiple endproducts of genes
+
|multiple endproducts of genes
|in development
|in development
|-
|-
Line 13: Line 13:
|implementation
|implementation
|-
|-
-
RnaO
+
|RnaO
|http://roc.bgsu.edu/
|http://roc.bgsu.edu/
|RNA sequence, structure, motifs, alignments
|RNA sequence, structure, motifs, alignments
|in development
|in development
|-
|-
-
GO
+
|GO
| implementation
| implementation
|-
|-
-
SO
+
|SO
| implementation
| implementation
|-
|-
-
PATO
+
|PATO
|http://www.bioontology.org/wiki/index.php/PATO
|http://www.bioontology.org/wiki/index.php/PATO
|phenotypic and trait ontology
|phenotypic and trait ontology
-
implementation
+
|implementation
|-
|-
-
MAO
+
|MAO
|http://bips.u-strasbg.fr/LBGI/MAO/mao.html
|http://bips.u-strasbg.fr/LBGI/MAO/mao.html
|multiple alignments of DNA,
|multiple alignments of DNA,
|-
|-
-
RNA and protein sequences and structures
+
|RNA and protein sequences and structures
|implementation
|implementation
|-
|-
-
NCBI Taxonomy
+
|NCBI Taxonomy
|http://www.ncbi.nlm.nih.gov/Taxonomy/
|http://www.ncbi.nlm.nih.gov/Taxonomy/
|Organismal classification, genetic code
|Organismal classification, genetic code
|used widely
|used widely
|-
|-
-
Data formats,
+
|Data formats,
| database schemas
| database schemas
|-
|-
-
NCBI data model http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML
+
|NCBI data model http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML
|sequences, alignments, annotations used at NCBI
|sequences, alignments, annotations used at NCBI
|}
|}

Revision as of 14:49, 9 April 2008

Protein Ontology
Ontologies PRO/PROEVO http://www.bioontology.org/wiki/index.php/PRO protein evolutionary families,
multiple endproducts of genes in development
protein structure, function implementation
RnaO http://roc.bgsu.edu/ RNA sequence, structure, motifs, alignments in development
GO implementation
SO implementation
PATO http://www.bioontology.org/wiki/index.php/PATO phenotypic and trait ontology implementation
MAO http://bips.u-strasbg.fr/LBGI/MAO/mao.html multiple alignments of DNA,
RNA and protein sequences and structures implementation
NCBI Taxonomy http://www.ncbi.nlm.nih.gov/Taxonomy/ Organismal classification, genetic code used widely
Data formats, database schemas
NCBI data model http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML sequences, alignments, annotations used at NCBI
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