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{|
{|
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Ontologies
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!Ontologies
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|-
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PRO/PROEVO
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!PRO/PROEVO
|http://www.bioontology.org/wiki/index.php/PRO
|http://www.bioontology.org/wiki/index.php/PRO
|protein evolutionary families,
|protein evolutionary families,

Revision as of 15:01, 9 April 2008

multiple endproducts of genes Protein Ontology RnaO development GO SO PATO MAO RNA and protein sequences and structures NCBI Taxonomy genetic code Data formats, database schemas NCBI data model NEXUS format widely NeXML trees, models, meta-info pPOD workflows CHADO phenotypes, phylogenies TreeBase
Ontologies
PRO/PROEVO http://www.bioontology.org/wiki/index.php/PRO protein evolutionary families,
in development
http://proteinontology.info/ protein structure, function implementation
http://roc.bgsu.edu/ RNA sequence, structure, motifs, alignments in
implementation
implementation
http://www.bioontology.org/wiki/index.php/PATO phenotypic and trait ontology
implementation
http://bips.u-strasbg.fr/LBGI/MAO/mao.html multiple alignments of DNA,
implementation
http://www.ncbi.nlm.nih.gov/Taxonomy/ Organismal classification,
used widely
http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML
sequences, alignments, annotations used at NCBI
Maddison, et al., 1997 character data, trees, assumptions, sets, notes used
https://www.nescent.org/wg_evoinfo/Future_Data_Exchange_Standard character data,
in development
processing of data related to phylogenetic analysis
in development
http://www.gmod.org/wiki/index.php/Schema sequence, genotypes,
used in GMOD
http://www.treebase.org character data, trees, meta-info on analyses in use
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