Wiki Table Editor
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{| | {| | ||
| - | + | !PRO/PROEVO | |
| - | + | !http://www.bioontology.org/wiki/index.php/PRO | |
| - | + | !protein evolutionary families, multiple endproducts of genes | |
| - | + | !in development | |
| - | + | ||
| - | + | ||
|- | |- | ||
|Protein Ontology | |Protein Ontology | ||
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|NCBI data model | |NCBI data model | ||
|http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML | |http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML | ||
| - | |||
| - | |||
|sequences, alignments, annotations | |sequences, alignments, annotations | ||
|used at NCBI | |used at NCBI | ||
Revision as of 15:04, 9 April 2008
| PRO/PROEVO | http://www.bioontology.org/wiki/index.php/PRO | protein evolutionary families, multiple endproducts of genes | in development |
|---|---|---|---|
| Protein Ontology | http://proteinontology.info/ | protein structure, function | implementation |
| RnaO | http://roc.bgsu.edu/ | RNA sequence, structure, motifs, alignments | in development |
| GO | implementation | ||
| SO | implementation | ||
| PATO | http://www.bioontology.org/wiki/index.php/PATO | phenotypic and trait ontology | implementation |
| MAO | http://bips.u-strasbg.fr/LBGI/MAO/mao.html | multiple alignments of DNA, | |
| RNA and protein sequences and structures | implementation | ||
| NCBI Taxonomy | http://www.ncbi.nlm.nih.gov/Taxonomy/ | Organismal classification, | |
| genetic code | used widely | ||
| Data formats, database schemas | |||
| NCBI data model | http://www.ncbi.nlm.nih.gov/IEB/ToolBox/SDKDOCS/DATAMODL.HTML | sequences, alignments, annotations | used at NCBI |
| NEXUS format | Maddison, et al., 1997 | character data, trees, assumptions, sets, notes | used widely |
| NeXML | https://www.nescent.org/wg_evoinfo/Future_Data_Exchange_Standard | character data, trees, models, meta-info | in development |
| pPOD | processing of data related to phylogenetic analysis workflows | in development | |
| CHADO | http://www.gmod.org/wiki/index.php/Schema | sequence, genotypes, phenotypes, phylogenies | used in GMOD |
| TreeBase | http://www.treebase.org | character data, trees, meta-info on analyses | in use |
