faa_ref6 - reference 6

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Multiple alignment of repeats only
Name                FAA
Number of sequences 37


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


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faaa_mouse  121  ....msfipvaedsdfpiqnlpygvfstqs......npkprigvai.gdqildlsvi..khlftgpalskhqhvfdettlnnfmglgqaawkearaslqn.llsasq................arlrddkelrqraftsq.asatmhlpat....igDYTDFYSSRQHATnvgimfrgken...................allpnwlHLPVGYHGRASSIVVSGTPIRRPMGQmrpdnskpp..........vygacrlLDMELEMAFFVg.pgnrfgepipisk.AHEHIFGMVLMNDWSARDiqqwe..yvplgpFLGKSf..gttisPWVVpmdalmpfvvpn..pkqdpkplpylchsqpy...tfdinLSVSLKGEGmsqaaticrsnfkhMYWTMLQQLTHHSvngcnlrpGDLLASGTISGsd.............pesfGSMLELSWKGtkaidv........gqgqtrtflldgdeviitghcqg.dgyrvgfgqcagkvlpalspa..............................................................................................................................................................................................................................................................................................................
q00770      128  ...maswlqipknspfslanipfgiisssk......lssrvpaiai.gdyaldls......kfas.sggfsqlpviqphlnvfkestlnafaalgrpvhrqvreyiq.kvfstetpf.....pqilrdnaalqkeallpl.sevtnhlpmq....igDYTDFYAGLNHAYnvgvlfrgpdn...................alqpnykHLPVAYHGRASSVVTSGTPLHRPQGQiltnpaanp.......klptfspckkLDIELELAFFVs.tpndlghpvhidk.AEDHIFGVVLMNDWSARDiqawe..yvplgpFNAKNf..gttitPWVVlidalepfrtvglepgnresllpylrekrad..taydipLEVEVTNAGgep.tvisrsnaknLLYSFPQMLAHHTitgcnlntGDLLGSGTISGke.............nqteGSFLEQT.NGknpikl........adgserlfledgdtvilrgma.gtegnyvgfgdcagtilppvqldl.............................................................................................................................................................................................................................................................................................................
o65374      142  mallksfidvgsdshfpiqnlpygvfkpes......nstprpavai.gdlvldlsaiseaglfdg.lilkdadcflqpnlnkflamgrpawkearstlqr.ilsfllfgfkvlvlvcfhaanepilrdndvlrrksfhqm.skvemivpmv....igDYTDFFASMHHAKncglmfrgpen...................ainpnwfRLPIAYHGRASSIVISGTDIIRPRGQghpqgnsep..........yfgpskkLDFELEMAAVVg.pgnelgkpidvnn.AADHIFGLLLMNDWSARDiqawe..yvplgpFLGKSf..gttisPWIVtldalepfgcqa..pkqdppplpylaekesv...nydisLE.............................LAHHTvngcnlrpGDLLGTGTISGpe.............pdsyGCLLELTWNGqkplsl........n.gttqtfledgdqvtfsgvckg.dgynvgfgtctgkivpspp................................................................................................................................................................................................................................................................................................................
FAAA_HUMAN  121  ....msfipvaedsdfpihnlpygvfstrg......dprprigvai.gdqildlsii..khlftgpvlskhqdvfnqptlnsfmglgqaawkearvflqn.llsvsq................arlrddtelrkcafisq.asatmhlpat....igDYTDFYSSRQHATnvgimfrdken...................almpnwlHLPVGYHGRASSVVVSGTPIRRPMGQmkpddskpp..........vygacklLDMELEMAFFVg.pgnrlgepipisk.AHEHIFGMVLMNDWSARDiqkwe..yvplgpFLGKSf..gttvsPWVVpmdalmpfavpn..pkqdprplpylchdepy...tfdinLSVNLKGEGmsqaaticksnfkyMYWTMLQQLTHHSvngcnlrpGDLLASGTISGpe.............penfGSMLELSWKGtkpidl........gngqtrkflldgdeviitgycqg.dgyrigfgqcagkvlpallps..............................................................................................................................................................................................................................................................................................................
faaa_rat    121  ....msfipvaedsdfpiqnlpygvfstqs......npkprigvai.gdqildlsvi..khlftgpvlskhqhvfdettlnsfmglgqaawkearaslqn.llsasq................aqlrddkelrqraftsq.asatmhlpat....igDYTDFYSSLQHATnvgimfrgken...................allpnwlHLPVGYHGRASSVVVSGTPIRRPMGQmrpdnskpp..........vygaskrLDMELEMAFFVg.pgnrfgepipisk.AQEHIFGMVLMNDWSARDiqqwe..yvplgpFLGKSf..gttisPWVVpmdalmpfvvpn..pkqdpkplpylchsqpy...tfdinLSVALKGEGmsqaaticrsnfkhMYWTILQQLTHHSvngcnlrpGDLLASGTISGsd.............pesfGSMLELSWKGtkaidv........gqgqtrtflldgdeviitghcqg.dgyrvgfgqcagkvlpalspa..............................................................................................................................................................................................................................................................................................................
Q94272      122  ...mksfvsvpqnsdfpiqnlpygvfstka......dssrhigvai.gdqilnlaei..anlfdgpqlkahqdvfkqstlnafmalprpawlearariqq.llsedc................avlrdnahlrsralvaq.sdatmhlpaq....igDYTDFYSSIHHATnvgimfrgken...................almpnwkWLPVGYHGRASSIVVSGTDLKRPVGQtkapdaevp..........sfgpsklMDFELEMAFFVggpenelgtrvpiek.AEDRIFGVVLMNDWSARDiqawe..yvplgpFLAKSf..attvsPWVVsiealrpyfven..pvqdpvppaylhhddpf...tldinLAVSIRPEGdavdhivcktnfkhLYWTLKQQLAHHTvngcnlraGDLLGSGTVSGpe.............egayGSMLELSWRGakevpv........gse.irkflkdgdevnlsgvcek.ngvrigfgecrgkvlpadi................................................................................................................................................................................................................................................................................................................
Q9XAS2      118  ...mppfd.vpegdpfgphnlpygvfsipgsldrtdrtdrtvgvrl.gdhvldagaa..ahalgspyaa....llaqptlnpllaagrtawsdvrralta.w....................vtvpshretlepf.fhpl.ssvtlhlpfe....vaDYVDFYASENHARnvgqifrpdaad..................sltpnwkHLPIGYHGRSGTVVVSGTDVVRPSGQrkapadaap..........vfgpsvrLDIEAEVGFVVgvps.elgspvalgd.FREHVFGLCLLNDWSARDvqawe..yvplgpFLGKSf..ttsvsAWITpldaleearvap..perthellpylddtdtdqdapggydLRISVAVNGh....vvseppfstMYWTAAQQLAHMTvngaslrtGDLYGSGTVSGpt.............ererGSLLELTWNGrdplel........png.krtfledgdvvtlsawapgpdgvrvglgevtgrvvgrgveqgv............................................................................................................................................................................................................................................................................................................
O30145      104  ...........................mrlvtf.erlgeerigfvq.gekvfdltlc..yasllrkegvavamrvaqalmppdmlgflege...eralee.aervrefve...........ekegevegpngeravwpl..sevklkaplk....pkLMVDFSTFEEHVR.mgfeklgm.....................sipqewyQVPVGYKMNPYSVIGPEEPVIWPSFT........................qiLDYELEFGIVVg....krgknvsked.AMDYVLGYTIVNDISARDmefielkamplgpLKSKDfdnatpmgPCIVtkdeik.............................dphnLKMVARVNGe....vwseastkdMHWKIPDLIAHLSkdqt.ihpGTVMLSGTPGGgc.......gmhvgkllkpGDVVELEIEGigvlrn........pivkt......................................................................................................................................................................................................................................................................................................................................................
Q9X4X0       87  ...........................mrlvtftqddgieragali.dndqvvv.............dlqaahrqvqggesaalssv.......lklveg.geqal................elartllrksptasviar.nevrlrapiqp...ppQMRDCSCFELHLRqafaaarraralrtedpeatlkamntradervietfnRQPIYYKCNRFAVIGADDEFLWPAFS........................kaLDFELEFGCYIg....kkgkdisrdn.ARDHIVGFTIFNDMSARDaqaaem.pgmlgpAKSKDfdtanimgPCLVtadelg.............................dpydLNMVARVNGe....ewgrgntrdMRWRFEDVIAHISrset.lypGEFLGSGTVGNgc.......gleqlrylkpGDRVELEVDGiaccap........rwamrsrferltd..............................................................................................................................................................................................................................................................................................................................................
O86346       71  ...........................mkwvtyrsdhg.ertgvls.gdaiyamppd.....................................vslldl.vgrgadgl.............rtageravrspaa.vval.devtlaapipr...ppSIRDSLCFLDHMRncqeamgggr....................vlmdtwyRIPAFYFACPSTVLGPYDDAPTAPGS........................awQDFELEIAAVIg....tsgkdltveq.AERSIIGYTIFNDWSARDlqmle.gqlrigqAKGKDs..gitlgPYLVtpdelepycrg........................gklsLRVIALVNGt....vigsgstaqMDWSFGEVIAYASrgvt.ltpGDVFGSGTVPTctlvehlrppesfpgwlhdGDVVTLQVEGlgetrq........tvrtsgtpfplalrpnpdaepdrrgvnpaptrvpftrglhevadrvwawtlpdggygfsnaglvagdgasllvdtlfdlaltremlaamkpvterapitdalithsngdhthgtqlldrsvriiaakgtseeiehgpapemlariqtadlgpvatrylrdrfghfdfsgiklrnadltfdrdlaielggrrvdllnlgpahttadsvvhvadagvlfagdllfigctpivwagpianwvaacdamialdaptvvpghgpvtgpdgiravrgylahiaeqaeaayrkglslpeavetidlgeyaswldservvvnvyqryreldpdtprqdllallvmqaewaarhct
o86527       59  .............................................................................................mriarfsidgnvafgavegdqpdqlvldiikgipfadyelsg.tkvplskvrllppvlp...skVVAFGRNYAEHARelgn..............................evpDAPFAFFKPSTSVIGPGDAVQYPSFT........................eeLHHEAELAVVIg....rmcrevprer.VQDVIFGYTCANDITARDvq.....rrekqwARAKGfdsscplgPWVEtdldla.............................aagdLTVQLTVNGa....qrqlgrtseMIHSIEDLIVNISeamt.llpGDVILTGTPAGvg.............plnvGDEVAVTIEGigtltn........kvvkrg.....................................................................................................................................................................................................................................................................................................................................................
o07877        1  ...........................................................................................................................................................................mgfkvdr.............................EAPFYFNKAASTFVASGSTIPYPPGT........................snYHYEMELVVAIg....kqafqiseae.AGSIIYGFACGLDMTRRDlqlva.rekgrpwDLGKDfeqsavvaPITKaaqf...............................aienQRISLSVNGe....ikqdqvladLVWSVPELIADLSrfyh.lapGDLIFTGTPAGvg.............pvvaGDTLEGTIDGltpvql........vig.pge....................................................................................................................................................................................................................................................................................................................................................
o86042        1  ...........................................................................................................................................................................mgrpvdk...........................svEQAFYFTKSPQTLVESGATVAYPPRT........................snYHYEMELVLAIg....kpgfrvsedq.AHELIYGYAAGLDMTRRDlqlva.rdkgrpwDTGKDieegsvcsEIVPmqgv...............................vveqGAIALEVNGq....tkqssnvdkLIWNVREIIADLStyyh.lqpGDLIYTGTPEGvg.............avvaGDKIIGRVEGiaeisl........tvg.pae....................................................................................................................................................................................................................................................................................................................................................
o86922       24  ................................................................................................................................mtmvfdp.saptlaqvsdgrifpv...rrIFCVGRNYAEHARemgrdpdr.............................EPPFFFTKWAETIVPSDVEVAYPSAT........................anFHYEAELVVAIg....legrdipvet.ALDHVFGYATGLDMTRRDlqlka.raegrpwDTGKNveqssplgLLHPvaecg..............................hlstGAISLTVNGe....vkqsadladLIWPVADIIAFLSglyr.llpGDLIYTGTPAGvg.............pvvpGDEIDVRIDGltptri........riaepar....................................................................................................................................................................................................................................................................................................................................................
yo23_caeel   12  .............................................................................................................................................msslagfrnla...tkIVCVGRNYKDHALelgn..............................aipKKPMLFVKTVNSFIVEGEPIVAPPGC........................qnLHQEVELGVVIs....kkasrisksd.AMDYIGGYTVALDMTARDfqdea.kkagapwFLAKSfdgscpigGFLPvsdip..............................nphdVELFCKINGk....dqqrcrtdvMIFDIPTLLEYTTqfft.levGDVVLTGTPAGvt.............kinsGDVIEFGLTDklnskf........nvq........................................................................................................................................................................................................................................................................................................................................................
O23443       14  ...........................................................................................................................................matsmiqrmfkqg...tkIVCVGRNYAAHAKelgn..............................avpKEPVIFLKPTSSYLENGGTIEIPHPL........................dsLHHEVELALVIg....qkardvpesi.AMDYIGGYAVALDMTARElqasa.kasglpwTVAKGqdtftpisSVLPkamvr..............................dpdnLELWLKVDGe....trqkgltkdMIFKVPYLISYISsimt.ly.GDVILTGTPEGvg.............pvkiGQKITAGITGlsevqf........dverrvkpls.................................................................................................................................................................................................................................................................................................................................................
p76004       17  ........................................................................................................................................myqhhnwqgalldypv...skVVCVGSNYAKHIKemgs..............................avpEEPVLFIKPETALCDLRQPLAIPSDF........................gsVHHEVELAVLIg....atlrqateeh.VRKAIAGYGVALDLTLRDvqgkm.kkagqpwEKAKAfdnscplsGFIPaaeftg.............................dpqnTTLSLSVNGe....qrqqgttadMIHKIVPLIAYMSkfft.lkaGDVVLTGTPDGvg.............plqsGDELTVTFDGhslttr........vl.........................................................................................................................................................................................................................................................................................................................................................
ynq8_yeast   10  ...............................................................................................................................................msynylkaa...rkIICIGRNYAAHIKelnn..............................stpKQPFFFLKPTSSIVTPLSSSLVKTTRpanstfnglnedgtnpgpifiprgvkVHHEIELALIVskhl.snvtkmkpee.VYDSISGVALALDLTARNvqdea.kkkglpwTISKGfdtfmpisAIVSrekfssyksn.........................lqdiFRVKCSVNGq....lrqdggtnlMLHPLHKILQHIStmis.lepGDIILTGTPAGvg.............elkpGDRVHCELLQnndniv........dmnfecenrpgpyefret.........................................................................................................................................................................................................................................................................................................................................
o58377       21  ...................................................................................................................................mnem.ssvrlpfrdgyydvrp...tkIVALAKNYAEHARemgs..............................eppEEPIIFLKPPSALIGPGSSIILPRRS........................krVDHEVELAVIMg....kraknvpask.AFDYILGYTIILDITARDlqaea.rkkgypwTISKGfdtfapigPRVVdsrel..............................dpsdLEIGLKVNGk....irqlgrtsqMIFKIPELIEYIShimt.lepGDIIATGTPPGvg.............plrhGDRIEAWIEGigkmef........dvlaedsilc.................................................................................................................................................................................................................................................................................................................................................
Q9UYW0       16  .........................................................................................................................................mirlpfrdgyyevrp...tkIIALAKNYAEHARemgs..............................eppEEPVIFLKPPSALIGPNSVIVLPRRS........................krVDHEVELAVIIg....kraknvpaek.AFDYILGYTILLDITARDlqaea.rkkgypwTVSKGfdtfapigPRIVdkrel..............................dpsdLEIGLKVNGk....vrqlgrtseMIFKIPELIEYISsimt.lepGDIIATGTPPGvg.............plrhGDKIEAWVEGigvlee........eviaedsilc.................................................................................................................................................................................................................................................................................................................................................
q9yg48       84  ...................................................................msagvrnladmvvgavdtplgplmgiyntrkgcietvegwvqnavgglrgfyfnphsvfdklsksltg.dcvtl.dnklappvsp...vsAWGVGRSYAEHARemg................................msKQIAFFSKPVTSLTGHLNPVVVPPVS........................ekPDYEGEIVIIIg....kriknastae.AGKAIAGYTAGADITDRLlqd......mmswSMAKGldtygpvgPVATiidspd.............................dldgLCVHTWLNGe....kvqrgctgdMIVSIPDMVSRLSalat.lrpGDIVFTGTPPGvg......harkpprylrhGDELEVRVSGlpplrn........qivktpgqq..................................................................................................................................................................................................................................................................................................................................................
o06724       92  ...............................................................mkfatgelynrmfvgliiddekimdlqkaekklfeletipgslieciaegdkfvaharqlaewakkpndelgsfmyslsevklhapipkps.knIICIGKNYRDHAIemgsea............................dipEHPMVFTKSPVTVTGHGDIVKSHEEV.......................tsqLDYEGELAVVIg....ksgtrisked.AYDHVFGYTIVNDITARDlq.....krhkqfFIGKSldttcpmgPVLVhkssiq.............................eperLKVETRVNGe....lrqsgsasdMIFSIPELIETLSkgmt.leaGDIIATGTPSGvg......kgftppkflrsGDKIDITIDPigtlsn........qig........................................................................................................................................................................................................................................................................................................................................................
O53242       35  .....................................................................................................................mtareiaehpfgtptftg.rswpladvrllapila...skVVCVGKNYADHIAemgg..............................rppADPVIFLKPNTAIIGPNTPIRLPANA........................spVHFEGELAIVIg....rackdvpaaq.AVDNILGYTIGNDVSARDqq.....qsdgqwTRAKGhdtfcpvgPWIVtdlapf.............................dpadLELRTVVNGd....vkqhartslMIHDIGAIVEWISaimt.llpGDLILTGTPAGvg.............piedGDTVSITIEGigtltn........pvvrkgkp...................................................................................................................................................................................................................................................................................................................................................
o33119       35  .....................................................................................................................mfarelaeypfgeltftg.rswpladvrllapmla...skVVCIGKNYADHIVemggqtg...........................lasADPVIFLKPNTAIIGPNVPIRLPANA........................spVHFEGELALVVg....rsckdvpavq.AVDCILGYTIGNDMSARDqq.....radgqwTRAKGhdtfcpvgPWIVtdlgpl.............................dpadLELRTAVNGe....vkqhsrtslMIHGIGAIMEWISavmt.llpGDLILTGTPAGvg.............pvedGDIVSITVEGigtltn........pvvrkgks...................................................................................................................................................................................................................................................................................................................................................
q59050       38  ..............................................................................................miisfekl....gekyk.iid................lnlnsikqkigdslnikeikp...tkIICVGLNYIDHAKelnm..............................eipEYPIIFLKPTSAIIYNEDYIIRPRIS........................krVDYEVELAIVIg....kkcknikkde.ANDYIMGYTILNDVTARDlq.....qkdgqwTRAKSfdtfcpigPRIVkdi................................dpmnLNIECRVNGe....ikqksntknMIFDVYELVEFVAsimt.lypGDIISTGTPPGvg.............elkaGDVVECEIEGigilrn........yvkdee.....................................................................................................................................................................................................................................................................................................................................................
o28058       44  ..............................................................................................mlgrfvan....griyegsfe..........idgellvfdg.yevpltavkflppvvp...skIIAVGLNYIDHAEelnm..............................pvpEEPILFMKPSTAVIGHDDCIILPQIS........................qrVDYEGELAVVIa....edcrnvpetn.AADYILGYTCFNDVTARDlq.....akdgqwTRAKSfdtfaplgPYIAeid................................dpskLGIQTRVNGk....vvqksntsnLIFDVFQLVSFVSsvmt.lkaGDVIATGTPAGvg.............mlkdGDVVEVEIEKigilrn........tavkidrqircec..............................................................................................................................................................................................................................................................................................................................................
o27551       58  ..............................................................................................mielkflrfmkdgrllhgfte.nrrileireeeylsdnpeviaehslddvrilppvsp...skVVCVGLNYRDHAAelgm..............................dipDEPIIFLKPPTTVIGSGDTVIYPEMS........................seVDYEVELAAVVs....erarrvdssa.ASEFIAGYTVLNDVTARDlq.....rrdgqwTRAKSfdtfcpigPVIEtdv................................tpdnLDISLKLNGe....vrqssntsnMIFTVHELLEFIShvmt.lepGDVIATGTPPGvg.............qmvpGDTVRATVEGvgtlvn........rversvwmd..................................................................................................................................................................................................................................................................................................................................................
p73637       58  ..............................................................................................mvqryvriqadsgtvhyglfqldhsvillsaapwlggqald.vavsegdyrllapcep...skIVAVGRNYRAHAAelgn..............................dvpAEPLLFFKPPSAIAADQEEIVYPSQS........................qrVDYEGELAVIIg....kqvkditeee.AASAIWGYTIANDITARDlq.....rqdsqwTRAKGfdgfcplgPWVVrhi................................dp.eAHLETTVNDe..etprqataisdMVFTPPVLVSYISrvmt.lypGDVILTGTPEGis.............alqvGDKVEVEIEGignltn........tiiappltapelaetveleveadn...................................................................................................................................................................................................................................................................................................................................
q9y3b0      106  .mlvsgrrrlltvllqaqkwpfqpsrdmrlvqfraphlvgphlgletgngggvinln..afdptlpktmtqfleq.............................................geatlsvarralaaqlpvlprsevtflapvtrp..dkVVCVGMNYVDHCKeqnv..............................pvpKEPIIFSKFASSIVGPYDEVVLPPQS........................qeVDWEVELAVVIg....kkgkhikatd.AMAHVGGFTVAHDVSARDwqmr...rngkqwLLGKTfdtfcplgPALVtkdsva.............................dphnLKICCRVNGe....vvqsgntnqMVFKTEDLIAWVSqfvt.fypGDVILTGTPPGvg......vfrkppvflkkGDEVQCEIEElgviin........kvv........................................................................................................................................................................................................................................................................................................................................................
o07875        3  ......................................................................................................................................................mp...rqVFAVGLNYRDHALgeaglk............................elpTSPLIFTKFPTCIAGPYDDLPLPVGN..........................VDWEIELVAVIg....trasrvsved.ALDHVAGYAVGQDFSERLmqlsgg...mpqfSLGKSfpgfgpfgPWLVtldald.............................etngLAVECTVNGv....kvqgsdtsqLIFPVNDLVSRLShvct.llpGDVIFTGTPAGvg......narnpkwflkpGDEVVSTIAQigsikq........tcvadpcq...................................................................................................................................................................................................................................................................................................................................................
o69352       71  ...........................mrvan.....qsgrlklvgdgvgvdvevasqgrftsdpqavfdrwdef.................................................rlwaesidfhgaepiv..esdlqapvprp..gqIFAVGVNYRDHVEesgl..............................slpEAPFVFTKFPGSITGPYNNIELPDGS..........................VDFEVELVAVIg....raarhvdasn.GWDYVAGVTLGQDLSERQlqlsgp..apqqfSLGKSyagfapigPVLVtpdefa.............................dpddIGVSTRLSGd....emqnsrtrhLIFPIPELVAYLSsilp.lspGDLIFTGTPEGig......wtrepkrlistDDELVSTADVigemrh........rfipsrhhsatssarsstnv.......................................................................................................................................................................................................................................................................................................................................
o68122       71  ...........................mklvrygergaekpgllhvdgtirdlsrvvrdidgkalsdeg........................................................lsklfwtdagklpiipegvrlgapvagv..gkLIAIGLNYADHAEeagl..............................tvpPEPVVFMKATSAICGPDDDVEAPRGS........................ekLDWEVELAFVIg....trakyvtled.AMDHVAGYMICNDVSERSfqiers....gqwVKGKShdtfaplgPWLVtkdeik.............................dpqaLDLWLNVNGv....rrqtgttatMVYGVAFLVHYLSqfmt.lepGDIITTGTPPGvg......mgsrppkflhaGDVIELGITGlgsqrq........vvvqa......................................................................................................................................................................................................................................................................................................................................................
Q9RJW4       73  ...........................mklvrlgdpgrerpaviddrgvtrdlssltsdidgaflaadgia......................................................rtrraladdvlpplrteglrfgppvarp..gaVVCIGQNYAAHAAesgs..............................eppTRPVIFFKPPNTVVGPNDEVEIPRGS........................arTDWEVELAVVIg....rtaryldspgqALEHVAGYAVSNDVSERDfqlehs...ggqwSKGKScatfnplgPFLVpadevp.............................dvqaLRLRSFVNGe....prqdsrtadMIFSVAQLVYDLSqylv.ldpGDVINTGTPEGva......lsgrfp.ylrpGDVMEIEIEGlgrqrq........alvpartssqsslv.............................................................................................................................................................................................................................................................................................................................................
q9x4x5       68  ..........................................mrllrveyraecf......wall.dada...aylqrirgpfaewa...............................geyasrgiaalaldkvg..iala.qcrilpplepg..arVFGVGLNYLSHLQhlgs..............................tapEHPLGYIKPESALVGASDDIQYPALT........................aqLDYEVELVAVI.......aralgdepcASACLLGYTCGNDISARDagkrig...rldlLTQKAmdrttpvgPWVVtldeigv............................gqphLDIELSVNDe....crqfdntrqMLFPIDELLNYVDarit.lqpGDLVFTGSTHGvg.......ledgr.flqpGDRVEVRIEGigsmsn........rvsqprvlttarsvgrlgqpvsp....................................................................................................................................................................................................................................................................................................................................
Q9RYT2       45  ...........................................................................................................mktanfiaggrtlkgelrqdgllydaag.dshhpddvqfllpltp...gkVIALALNYADHVAelgf..............................kapEEPVMFLKPNTSLLPHQGTVIYPRGA........................kfMHYEVELGIVIg....rdarrvkakd.ADDYVGGYTIANDLVVRDyvs....nyyrppMRAKGwdtfgplgPYLVsadevp.............................dpynLGLRAYVNGe....lrqegstrdMILKAPELIEFMSrfmt.leaGDVILTGTPKGvs.............hvhpGDVMRLEIDGlgalen........pvaledesaepliadegerk.......................................................................................................................................................................................................................................................................................................................................
Q46978_1      3  ......................................................................................................................................................mk...gtIFAVALNHRSQLDawqeafqqspyk......................appKTAVWFIKPRNTVIGCGEPIPFPQGE.........................kVLSGATVALIVg....ktatkvreed.AAEYIAGYALANDVSLPEe......sfyrpaIKAKCrdgfcpigETVAls.................................nvdnLTIYTEINGr....padhwntadLQRNAAQLLSALSefat.lnpGDAILLGTPQArv.............eiqpGDRVRVLAEGfpplen........pvvderevttrksfptlphph......................................................................................................................................................................................................................................................................................................................................
Q46978_2    223  ...........................................................................................................................................................gtLFALGLNYADHASelef..............................kppEEPLVFLKAPNTLTGDNQTSVRPNNI........................eyMHYEAELVVVIg....kqarnvsead.AMDYVAGYTVCNDYAIRDyle....nyyrpnLRVKSrdgltpmlSTIVpkeaip.............................dphnLTLRTFVNGe....lrqqgttadLIFSVPFLIAYLSefmt.lnpGDMIATGTPKGls.............dvvpGDEVVVEVEGvgrlvn........rivseetak..................................................................................................................................................................................................................................................................................................................................................
Q9RPU5_1      3  ......................................................................................................................................................mk...gtVFAVALNHRSQLDawqeafsqppyn......................appKTAVWFIKPRNTVIRHGEPILYPQGE.........................kVLSGATVALIVg....ktasrkrsea.AAEYIAGYALANEVSLPEe......sfyrpaIKAKCrdgfcplgEMAPls.................................dvdnLTIITEINGr....eadhwntadLQRSAAQLLSALSefat.lnpGDAILLGTPQNrv.............alrpGDRVRILAKGlpalen........pvvaedefarnqtftwplsat......................................................................................................................................................................................................................................................................................................................................
Q9RPU5_2    223  ...........................................................................................................................................................gtLFALGLNYADHASelaf..............................tppKEPLVFIKAPNTFTEHHQTSVRPNNV........................eyMHYEAELVVVIg....ktarkvseae.AMEYVAGYTVCNDYAIRDyle....nyyrpnLRVKSrdgltpigPWIVdkeavs.............................dphnLTLRTFVNGe....lrqegttadLIFSIPFLISYLSefmt.lqpGDMIATGTPKGls.............dvvpGDEVVLEIKGvgrlvn........qivceesan..................................................................................................................................................................................................................................................................................................................................................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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