dead_ref6 - reference 6

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Multiple alignment of repeats only
Name                DEAD
Number of sequences 7


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          *************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
BRR2_YEAST_1  477  ........mtehetkdkakkireiyrydemsnkvlkvdkrfmntsqnpqrdaeisqpksmsgrisakdmgqglcnninkglkendvavektgksaslkkiqqhntilnsssdfrlhyypkdpsnvetyeqilqwvtevlgndiphdliigtadifirqlkeneenedgnieerkekiqhelginidslkfnelvklmknitdyethpdnsnkqavailaddeksdeeevtemsnnanvlggeindnedddeeydyndvevnskkknkralpniendiiklsdsktsniesvpiysidefflqrklrselgykdtsviqdlsekilndietlehnpvaleqklvdllkfenislaefilknrstifwgirlaksteneipnliekmvakglndlveqykfretthskreldsgddqpqsseakrtkfsnpaippvidlekikfdessklmtvtkvslpegsfkrvkpqydeihipaps.kpvidye...lkeitslpdwcqeafpssettslnpiQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLkalshhynpktk.......klnlsafKIVYIAPLKALVQEQVREFQrrlaf.lGIKVAELTg.dsrlsrKQIDETQVLVSTPEKWDITTrns.nnlaIVELVRLLIIDEIHLLhdd.rgPVLESIVARtfwaskygqeypRIIGLSATLpnyedvgrflrv.pkeglfyfdssfrpcplsqqfcgiker.nslkklkamndacyekvlesin..egnqIIVFVHSRKETSRTATWLknkfaeenithkltkndagskqil.kteaanvldpslrkliesgigthhagltrsdrsLSEDLFadgLLQVLVCTATLAWGVNLPAHTVIIKgtdvyspekgsweqlspQDVLQMLGRAGRPRYdtf.gegiiitdqsnvqyylsvlnqqlpiesqfvsklvdnlnaevvagnikcrndavnwlaytylyvrmlaspmlykv.pdissdgqlkkfres.lvhsalcilkeqelvl............ydaendvieatdlgniassfyinhasmdvynreldehttqidlfrifsmseefkyvsvryeekrelkqllekapip........irediddplakvnvllqsyfsqlkfegfalnsdivfihqnagrllramfeiclkrgwghptrmllnlcksattkmwptncplrqfktcpvevikrlea....stvpwgdylqletpaevgrairsekygkqvydllkrfpkmsvtcnaqpitrsvmrfnieiiadw.iwdmnvhgsl..epfllmledtdgdsilyydvlfitpdivghe..ftlsftyelkqhnqnnlppnffltlisenwwhsefeipvsfngfklpkkfppptpllenis...................................
BRR2_YEAST_2 1329  .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................istselgnd.dfsevfe...fktfnkiQSQVFESLYNSNDSVFVGSGKGTGKTAMAELALLnhwrqn..................kgRAVYINPSGEKIDFLLSDWNkrfshlaGGKIINKLgndpslnlKLLAKSHVLLATPVQFELLSrrw.rqrkNIQSLELMIYDDAHEIsqgvygAVYETLISRmifiatqlekkiRFVCLSNCLanardfgewagm.tksniynfspseriepleiniqsfkdv.ehisfnfsmlqmafeasaaaag..nrnsSSVFLPSRKDCMEVASAFmkfskaiewdmlnv....eeeqiv..pyiekltdghlraplkhgvgilykgmasnderIVKRLYeygAVSVLLISKDCSAFACKTDEVIIL.gtnlydgaehkympytiNELLEMVGLASGNDSm.a.gkvliltshnmkayykkflieplptesylqyiihdtlnneiansiiqskqdcvdwftysyfyrrihvnpsyygvrdtsphgisvflsnlvetclndlvessfieiddteaevtaevnggddeateiistlsngliashygvsfftiqsfvsslsntstlknmlyvlstavefesvplrkgdrallvklskrlplrf......pehtssgsvsfkvflllqayfsrlelpv.dfqndlkdilekvvplinvvvdilsangylnatt.amdlaqmliqgvwdvdnplrqiphfnnkilekcke...invetvydimaledeerdeiltltdsqlaqvaafvnnypnvel.tysln.............nsdslisgvkqkitiqltrdvepenl...............qvtsekypfdk.leswwlvlgevskkelyaikkvtlnketqqy......elefdtptsgkhn.ltiwcvcdsyld.adkelsfeinvk................
O48534_1      485  mtnlggggaeeqarlkqygykvnsslvlnsderrrdthessgepeslrgridpksfgdrvvrgrphelderlnkskkkkercddlvsareskrvrlrevsvlndtedgvyqpktketrvafeimlgliqqqlggqpldivcgaadeilavlknesvknhekkveiekllnvitdqvfsqfvsigklitdyeeggdslsgkasedggldydigvaleceedddesdldmvqdekdeededvvelnktgvvqvgvaingedarqakedtslnvldidaywlqrkisqeyeqkidaqecqelaeellkilaegndrdveikllehlqfekfslvkfllqnrlkvvwctrlargrdqeernqieeemlglgselaaivkelhakratakereekrekdikeeaqhlmdddsgvdgdrgmrdvddldlengwlkgqrqvmdleslafnqggftrennkcelpdrsfrirgkefdevhvpwvs.kkfdsne..klvkisdlpewaqpafr..gmqqlnrvQSKVYGTALFKADNILLCAPTGAGKTNVAVLTILhqlglnmnpgg........tfnhgnyKIVYVAPMKALVAEVVDSLSqrlkd.fGVTVKELSg.dqsltgQEIKETQIIVTTPEKWDIITrks.gdrtYTQLVRLLIIDEIHLLddn.rgPVLESIVARtlrqiestkehiRLVGLSATLpncddvasflrvdlknglfifdrsyrpvplgqqyiginvk.kplrrfqlmndicyqkvvava...gkhqVLIFVHSRKETAKTARAIrdtamandtlsrflkedsqsreil.kclagllknndlkellpygfaihhagltrtdreIVENQFrwgNLQVLISTATLAWGVNLPAHTVIIKgtqvynpergewmelspLDVMQMIGRAGRPQYdqq.gegiiitgysklqyylrlmneqlpiesqfiskladqlnaeivlgtiqnareachwlgytylyvrmvrnptlygvspdalakdllleerradlihsaatildknnlik............ydrksghfqvtdlgriasyyyishgtiaaynenlkptmndielcrlfslseefkyvtvrqdekmelaklldrvpip........vketledpsakinvllqvyisklkleglsltsdmvyitqsagrllraifeivlkrgwaqlsqkalnlskmvgkrmwsvqtplwqfpgipkeilmklek.....ndlvweryydlssqelgelicnpkmgrplhkyihqfpklklaahvqpisrsvlqveltvtpdf.hwddkankyv..epfwiivedndgekilhheyflfkkrvided..htlnftvpis....epippqyfirvvsdkwldsptvlpvsfrhlilpekyppptelldlqp...................................
O48534_2     1332  .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lpvmalrnp.syetlyqd..fkhfnpvQTQVFTVLYNTSDNVVVAAPTGSGKTICAEFAILrnhlegpds...............amRVVYIAPLEAIAKEQFRDWEkkfgkglGLRVVELTg.etlldlKLLEKGQIIISTPEKWDALSrrw.kqrkYIQQVSLFIVDELHLIggq.ggQVLEVIVSRmryissqvgnkiRIVALSTSLanakdlgewiga.sscgvfnfppnvrpvpleihihgvdil.sfearmqamtkptytaivqhak..nkkpAIVFVPTRKHVRLTAVDLiayshmdnmkspdfll.gnleele..pfliqiceetlketlrhgigylheglsnldqeIVTQLFeagRIQVCVMSSSLCWGTPLKAHLVVVMgthfydgrenshsdypiSNLLQMMGRGSRPLLdda.gkcvifchaprkeyykkflyealpveshlqhflhdnfnaevvarvienkqdavdyltwsfmyrrlpqnpnyynllgvshrhlsdhlselventlsdlevskcieidn................eldlsplnlgmiasyyyinyttierfssllasktkmkglleiltsaseydlipirpgeedavrrlinhqrfsf.......qnprctdprvktsallqahfsrqkisg.nlvmdqcevllsatrllqamvdvissngclnlallamevsqmvtqgmwdrdsmllqlphftkdlakrchenpgnnietifdlvemeddkrqellqmsdaqlldiarfcnrfpnidl.tyeiv.............gsnevspgkditlqvllerdmegrte.............vgpvdaprypktk.eegwwlvvgeaktnqlmaikrislqrkaqvk.......lefavptetgeksytlyfmcdsylg.cdqeysftvdvkdsdaadhmee......
Q9SYP1_1      484  manlgggaeaharfkqyeyransslvlttdnrprdtheptgepetlwgkidprsfgdrvakgrpqeledklkkskkkerdvvddmvnirqskrrrlreesvltdtddavyqpktketraayeamlgliqkqlggqppsivsgaadeilavlkndafrnpekkmeiekllnkienhefdqlvsigklitdfqeggdsgggranddegldddlgvavefeeneeddeesdpdmveedddeeddeptrtggmqvdagindedagdanegtnlnvqdidaywlqrkisqayeqqidpqqcqvlaeellkilaegddrvvedkllmhlqyekfslvkfllrnrlkvvwctrlaraedqeernrieeemrglgpeltaiveqlhatratakereenlqksinee.arrlkdetggdggrgrrdvadrdsesgwvkgqrqmldleslafdqggllmankkcdlppgsyrshgkgydevhvpwvs.kkvdrne..klvkitempdwaqpafk..gmqqlnrvQSKVYDTALFKAENILLCAPTGAGKTNVAMLTILqqlemnrntdg........tynhgdyKIVYVAPMKALVAEVVGNLSnrlkd.yGVIVRELSg.dqsltgREIEETQIIVTTPEKWDIITrks.gdrtYTQLVRLLIIDEIHLLhdn.rgPVLESIVARtlrqiettkeniRLVGLSATLpnyedvalflrvdlkkglfkfdrsyrpvplhqqyigisvk.kplqrfqlmndlcyqkvlaga...gkhqVLIFVHSRKETSKTARAIrdtamandtlsrflkedsvtrdvl.hshedivknsdlkdilpygfaihhaglsrgdreIVETLFsqgHVQVLVSTATLAWGVNLPAHTVIIKgtqvynpekgawmelspLDVMQMLGRAGRPQYdqh.gegiiitgyselqyylslmneqlpiesqfiskladqlnaeivlgtvqnareachwlgytylyirmvrnptlyglapdalakdvvleerradlihsaatildknnlvk............ydrksgyfqvtdlgriasyyyithgtiatynehlkptmgdidlyrlfslsdefkyvtvrqdekmelaklldrvpip........iketleepsakinvllqayisqlkleglsltsdmvyitqsagrlvralyeivlkrgwaqlaekalnlskmvgkrmwsvqtplrqfhglsndilmqlek.....kdlvweryydlsaqelgelirspkmgkplhkfihqfpkvtlsahvqpitrtvlnveltvtpdf.lwdekihkyv..epfwiivedndgekilhheyfllkkqyided..htlhftvpif....eplppqyfvrvvsdkwlgsetvlpvsfrhlilpekyppptelldlqp...................................
Q9SYP1_2     1331  .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lpvtalrnp.nyeilyqd..fkhfnpvQTQVFTVLYNTNDNVLVAAPTGSGKTICAEFAILrnhhegpda...............tmRVVYIAPLEAIAKEQFRIWEgkfgkglGLRVVELTg.etaldlKLLEKGQIIISTPEKWDALSrrw.kqrkYVQQVSLFIVDELHLIggq.hgPVLEVIVSRmryissqvinkiRIVALSTSLanakdlgewiga.sshglfnfppgvrpvpleihiqgvdis.sfearmqamtkptytaivqhak..nkkpAIVFVPTRKHVRLTAVDLmayshmdnpqspdfll.gkleeld..pfveqireetlketlchgigylheglssldqeIVTQLFeagRIQVCVMSSSLCWGTPLTAHLVVVMgtqyydgrenshsdypvPDLLQMMGRASRPLLdna.gkcvifchaprkeyykkflyeafpvesqlqhflhdnfnaevvagvienkqdavdyltwtfmyrrlpqnpnyynlqgvshrhlsdhlselventlsdleaskcieved................emelsplnlgmiasyyyisyttierfssllssktkmkglleiltsaseydmipirpgeedtvrrlinhqrfsf.......enpkctdphvkanallqahfsrqnigg.nlamdqrdvllsatrllqamvdvissngwlnlallamevsqmvtqgmwerdsmllqlphftkdlakrcqenpgknietvfdlvemedeerqellkmsdaqlldiarfcnrfpnidl.tyeiv.............gseevnpgkevtlqvmlerdmegrte.............vgpvdslrypktk.eegwwlvvgdtktnqllaikrvslqrkvkvk.......ldftapsepgeksytlyfmcdsylg.cdqeysfsvdvkgsgagdrmee......
O75643_1       25  .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................rrqrkgyeevhvpalkpkpfgsee..qllpveklpkyaqagfe..gfktlnriQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLreigkhinmdg........tinvddfKIIYIAPMRSLVQEMVGSFGkrlat.yGITVAELTg.dhqlckEEISATQIIVCTPEKWDIITrkg.gertYTQLVRLIVLDEIHLLhdd.rgPVLEALVARairniemtqedvRLIGLSATLpnyedvatflrvdpakglfyfdnsfrpvpleqtyvgitek.kaikrfqimneivyekimeha...gknqVLVFVHSRKETGKTARAIrdmclekdtlglflregsastevl.rteaeqcknlelkdllpygfaihhagmtrvdrtLVEDLFgdkHIQVLVSTATLAWGVNLPAHTVIIKgtqvyspekgrwtelgaLDILQMLGRAGRPQYdtk.gegilitshgelqyylsllnqqlpiesqmvsklpdmlnaeivlgnvqnakdavnwlgyaylyirmlrsptlygishddlkgdplldqrrldlvhtaalmldknnlvk............ydkktgnfqvtelgriashyyitndtvqtynqllkptlseielfrvfslssefknitvreeeklelqkllervpip........vkesieepsakinvllqafisqlklegfalmadmvyvtqsagrlmraifeivlnrgwaqltdktlnlckmidkrmwqsmcplrqfrklpeevvkkiek.....knfpferlydlnhneigelirmpkmgktihkyvhlfpklelsvhlqpitrstlkveltitpdf.qwdekvhgss..eafwilvedvdsevilhheyfllkakyaqde..hlitffvpvf....eplppqyfirvvsdrwlscetqlpvsfrhlilpekyppptelldlqp...................................
O75643_2      872  .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lpvsalrns.afeslyqd.kfpffnpiQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILrmllqns.................egRCVYITPMRLWQEQVYMDWYekfqdrlNKKVVLLTg.etstdlKLLGKGNIIISTPEKWDILSrrw.kqrkNVQNINLFVVDEVHLIgge.ngPVLEVICSRmryissqierpiRIVALSSSLsnakdvahwlgc.satstfnfhpnvrpvplelhiqgfnis.htqtrllsmakpvfhaitkhs...pkkpVIVFVPSRKQTRLTAIDIlttcaadiqrqrflhc..tekdli..pyleklsdstlketllngvgylheglspmerrLVEQLFssgAIQVVVASRSLCWGMNVAAHLVIIMdtlyyngkihayvdypiYDVLQMVGHANRPLQdde.grcvimcqgskkdffkkflyeplpveshldhcmhdhfnaeivtktienkqdavdyltwtflyrrmtqnpnyynlqgishrhlsdhlselveqtlsdleqskcisied................emdvaplnlgmiaayyyinyttielfsmslnaktkvrglieiisnaaeyenipirhhednllrqlaqkvphkl.......nnpkfndphvktnlllqahlsrmqlsa.elqsdteeilskairliqacvdvlssngwlspalaamelaqmvtqamwsedsylrrlppfpsglfkrctd...kgvesvfdimemedeernallqltdsqiadvarfcnrypniel.syevv.............dkdsirsggpvvvlvqlereeevtg................pviaplfpqkr.eegwwvvigdaksnslisikrltlqqkakvk.......ldfvapatggrh.ntlyfmsdaymg.cdqeykfsvdvkeaetdsdsd.......
Q9U2G0_1      454  ...............................madelariqqyeyrqnsnlvlsvdynltdrrgreeptgevlpitdkemrkmkmgdraikgkapvqdqkkkrkkkddekaqqfgrnvlvdnnelmgaykprtqetkqtyevilsfildalgdvprevlcgaadevlltlkndkfrdkekkkeveallgpltddriavlinlskkisdfsieeenkpegdgdiyenegvnvqfdsdeeeddggmvneikgdseeeseeeegvdtdytatlkgdghltedeqkargilhprdidahwiqrslakyfkdpliaqqkqtevigilknaaddrdaenqlvlllgfdqfefikclrqnrlmilyctllrqanekerlqieddmrsrpelhpilallqetdegsvvqvekskrdaekskkaataaneaisagqw.qagrkmldlndltfsqgshlmsnkrcelpdgsyrrqkksyeeihvpalkprpfaege..klvsvselpkwaqpafd..gykslnriQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTMLqeignhlaedg........svkldefKIVYIAPMKSLVQEMVGSFSkrlap.fGITVGEMTg.daqmskEQFMATQVIVCTPEKYDVVTrkg.geraYNQMVRLLIIDEIHLLhdd.rgPVLESIVVRtirqmeqnhdecRLVGLSATLpnyqdvatflrv.kpehlhffdnsyrpvpleqqyigvtek.kalkrfqamnevvydkimeha...gksqVLVFVHSRKETAKTAKAIrdaclekdtlsafmregsasteil.rteaeqaknldlkdllpygfaihhagmnrvdrtLVEDLFadrHIQVLFSTATLAWGVNLPAHTVIIKgtqiynpekgrwtelgaLDIMQMLGRAGRPQYddr.gegilitnhselqyylslmnqqlpvesqmvsrltdmlnaevvlgtvssvseatnwlgytflfvrmlknptlygitheqaradplleqrradlihtacvlldkaglik............ydkrsgiiqatelgriashfyctyesmqtynkllvetcsdidlfrifsmssefkllsvrdeeklelqkmaehapip........ikenldeasaktnvllqayisqlklegfalqadmvfvaqsagrlfralfeivlwrgwaglaqkvltlckmvtqrqwgslnplhqfkkipsevvrsidk.....knysfdrlydldqhqlgdlikmpkmgkplfkfirqfpklemttliqpitrttmrieltitpdf.kwdekvhgsa..egfwifiedtdgekilhheffllkqkfcsde..hvvkmivpmf....dpmpplyyvrivsdrwigaetvlpisfrhlilpekyppptelldlqp...................................
Q9U2G0_2     1300  .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lpisavtnk.efqtvfaesgfkvfnpiQTQVFRTVFESNENVIVCAPNGSGKTAIAELAVLrhfentp.................eaKAVYITPMEDMATKVYADWKrrlepaiGHTIVLLTg.eqtmdlKLAQRGQLIISTPERWDNISrrw.kqrkSVQNVKLFIADDLHMIgas.ngAVFEVVCSRtryissqlesavRVVALSSSLtnardlgmwlgc.sasatfnfmpstrpvpldleiksfnls.hnasrfaamerpvyqaicrhagklepkpALVFVPVRRQTRPVAVALltmaladgapkrflrlaehddtfq..alladiedeslresvscgvgflhegtapkdvhIVQQLFesnAIQVCVVPRGMCYQIEMSAYLVVVMdtqfyngkyhvyedypiADMLHMVGLANRPILdsd.akcvvmcqtskrayykkflcdplpveshldhclhdhfnaeivtktienkqdaidyltwtllyrrmtqnpnyynlqgtthrhlsdalselveltlkdlenskciavkd................emdtvslnlgmiasyyyisyqtielfsmslkektktralieiisassefgnvpmrhkedvilrqlaerlpgq.......lknqkftdphvkvnllihahlsrvklta.elnkdtelivlracrlvqacvdvlssngwlspaihamelsqmltqamysnepylkqlphcsaalleraka...kevtsvfellelenddrsdilqmegaeladvarfcnhypsiev.atele.............ndvvtsndnlmlavs.lerdndidgl.............appvvaplfpqkrkeegwwlvigdsesnalltikrlvinekssvq.......ldfaaprpghhk.fklffisdsylg.adqefdvafkveepgrsnrkrkhekeed
P53327_1      268  ............................................................................................................................................................................................................................msteysadssksfmiamqsmidtsqtfnldrskislpdfddelkkvqkdepnqrteltvlsqdrndwddifeefkdisfaqlqsiidsyktknavavykkigklineaettlssnvlletvlqmvykhqkqelekelldflgtgnidlvslllqhrrmivatpiettilliknavnstpefltqqdirnqvlesaedaknrklnpatkiikyphvfrkyeagsttamafagqkftlpvgttrmsyntheeiiipaadqasnknylytkllkisdldhfcktvf...pyetlnqiQSLVYPVAYKTNENMLICAPTGAGKTDIALLTIIntikqfsvvngenei....diqyddfKVIYVAPLKALAAEIVDKFSkklap.fNIQVRELTg.dmqltkAEILATQVIVTTPEKWDVVTrkangdndLVSKVKLLIIDEVHLLhed.rgPVIETLVARtlrqvessqsmiRIIGLSATLpnfmdvadflgvnrqigmfyfdqsfrpkpleqqllgcrgkagsrqskenidkvaydklsemiq..rgyqVMVFVHSRKETVKSARNFiklaesnhevdlfapd.piekdky.srslvknrdkdmkeifqfgfgihhagmarsdrnLTEKMFkdgAIKVLCCTATLAWGVNLPADCVIIKgtqvydskkggfidlgiSDVIQIFGRGGRPGFgsangtgilctsndrldhyvslitqqhpiesrfgsklvdnlnaeislgsvtnvdeaiewlgytymfvrmrknpftygidweeiandpqlyerrrkmivvaarrlhalqmiv............fdevsmhfiakdlgrvssdfyllnesveifnqmcdprateadvlsmismssefdgikfreeeskelkrlsdesvecq.......igsqldtpqgkanvllqayisqtrifdsalssdsnyvaqnsvricralfligvnrrwgkfsnvmlnicksiekrlwafdhplcqfd.lpeniirrird.....tkpsmehlleleadelgelvhnkkagsrlykilsrfpkinieaeifpittnvmrihialgpdf.vwdsrihgda..qffwvfveesdksqilhfekfilnrrqlnnq..hemdfmipls....dplppqvvvkvvsdtwigcesthaisfqhlirpfnetlqtkllklrp...................................
P53327_2     1121  .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lptsalqnp.liesiy...pfkyfnpmQTMTFYTLYNTNENAFVGSPTGSGKTIVAELAIWhafktfp.................gkKIVYIAPMKALVRERVDDWRkkitpvtGDKVVELTg.dslpdpKDVHDATIVITTPEKFDGISrnw.qtrkFVQDVSLIIMDEIHLLasd.rgPILEMIVSRmnyissqtkqpvRLLGMSTAVsnaydmagwlgv.kdhglynfpssvrpvplkmyidgfpdnlafcplmktmnkpvfmaikqhs...pdkpALIFVASRRQTRLTALDLihlcgmednprrflni.ddeeelq..yylsqvtddtlklslqfgiglhhaglvqkdrsISHQLFqknKIQILIATSTLAWGVNLPAHLVIIKgtqffdakiegyrdmdlTDILQMMGRAGRPAYdtt.gtaivytkeskkmfykhflnvgfpvesslhkvlddhlgaeitsgsitnkqealdflswtflfrrahhnptyygieddtstagvsehlsslidstlenlresqcvllh................gddivatpflsissyyyishltirqllkqihdhatfqevlrwlslaveynelpvrggeiimneemsqqsrysvestftdefelpmwdphvktflllqahlsrvdlpiadyiqdtvsvldqslrilqayidvaselgyfhtvltmikmmqcikqgywyeddpvsvlpglqlrrikdytf....seqgfiemtpq..qkkkklltleeigrfgykkllnvfdqltfgmtesedt.........kkrfvsvcqrlpvlegmkfeeqennevltfyskhlsskhnngfevycdkfpkiq.kelwfli.ghkgde.llmikrcqpkqmnkev....iihcdlfipeeirgeelqfslindalglrydmvhklis...................
O60072_1      257  ...................................................................................................................................................................................................................................mevelnyvvnhleklgpasfcdtpysfslsdsnaelgalslkvdeilktnynlinpedvtdsdnnefalkdltwlqnccneisqsssteldasvlfeavimslkatedqcaiqedllnlvgldhidlisdivanssnlieeymnqndtsiaaqlsdgytseagssathgqglldslksrprrfsrsrdnrgplftgqqvfevekyphvygdkrlgntisvi..gkkfalpagseredyqkyeeiivphaqrapqmqge..klleissmdilcrktfl..syqtlnriQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLqtisnyvesmnlmdesepldvhrddfKIVYIAPMKALAAEVVEKMGkrlaw.lGLKTRELTg.dmqltkTEIAETQILVTTPEKWDVVTrksvgdtqLAEKVRLVIIDEVHMLhde.rgAVIESLVARtqrlvetsqqmiRIVGLSATLpnyldvadflgvnrykglfyfssafrpcpieqhfigakg..spkivnsnideacfdkvlkliq..eghqVMIFVHSRKETINSAKKLreqffhegeadlldns.qhekyslaqrdvsksknkelkelfkysmgihnagmlrsdrhLTERLFsmgILKILCCTATLAWGVNLPAYAVLIKgtqlydpqkgsfvdlgvLDVLQIFGRAGRPQFess.avayiitthdklshyisvvtqqspiesrftdrlvdnlnaevslgtvtnideavswlgytylyirmrrnplvygiaydelvedpllgskrrelvsvaagrladnqmiv............ynkkngylipkdlgriasnyyinyqtvstlnnllkskmseadiiallsqcsefsqiksrenehreleslmensspcq.......lrdsisntsgkvnvilqsyisrahvedftltsdtnyvaqnagritralfeiamsrtwa.saftilslnksidrrqwsfehpllqfd.lphdlavkven...qcgslsleelsdmstgelgdlihnrkmgptvkkfisklpllninvdllpltknvlrlvlnitpnf.nwdmryhgns..qmfwifvedsngleilhheqlllnkrnvsts..hllsftipvs....nplpsqlyiiavsdkwlgaetvtpvslsnvvfhddsnpitelldlqp...................................
O60072_2     1114  .......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lpitalhdp.vlegicak.rfsffnavQTQFFHTIYHTDTNIFVGAPTGSGKTMAAELATWralhnyp.................ksKVVYIAPMKALVKERVKDWGhrlvepmGISMIELTg.dtnpdvKAVTNANIIITTPEKWDGITrsw.ksrkYVQDVSLIILDEIHLLgsd.rgPVLEMIVSRmnyvasqtnkkvRVLGLSTAVanandlanwlni..rdglfnfrhsvrpvpleiyidgfpgr.aycprmmsmnkpafqaikths...ptqpVLIFVSSRRQTRLTAKDLiafcglednprrflym..deeele..mivsevedkslklalpfgialhhagltendrkISEELFvnnKVQILIATSTLAWGVNTPAHLVIVKgteyydakiggykdmdlTDVLQMLGRAGRPQFdns.gvarifvqdikksfykhflhsgfpvesylhkvldnhlnaeiatgtidciqgamdfltctyfyrrvhqnpvyygadgddqksidtylsklvvtafneleksaciyrvn................eetyapttlgrivsyyylfhttirnfvqkitenaefdlalqllaeasefddlairhnedlinieinkslkysaac.....lnlpmvdahvkafiltqahmarlklpvddyvtdtstvldqviriiqsyidvsaelgyshvclqyislmqclkqacypseiyraslpglnassekeard.....ylnkfagnktdelyqmlcndpnvfdieslvnslisypkmni...................evsqsssdkllly...lrrlnqplnp.............dfyifaplfpkpq.segffvliidsetqelfairrasfagrrnddsirlslrismdipptcrnrnvkvmvvcdgypliyehkivlmi...................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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