zf_ref6 - reference 6

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Multiple alignment of repeats only
Name                ZF
Number of sequences 4


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      *****************************                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
SWI5_YEAST_1  548  mdtsnswfdaskvqslnfdlqtnsyysnargsdpssyaiegeyktlatddlgnilnlnygetnevimneindlnlplgplsdeksvkvstfseligndwqsmnfdlennsrevtlnatsllnenrlnqdsgmtvyqktmsdkphdekkismadnllstinkseinkgfdrnlgelllqqqqelreqlraqqeankklelelkqtqykqqqlqatlensdgpqflspkrkispasenvedvyanslspmisppmsntsftgspsrrnnrqkyclqrknssgtvgplcfqelnegfndslispkkirsnpnenlssktkfitpftpksrvssatsnsanitpnnlrldfkinvedqeseysekplglgiellgkpgpsptksvslksasvdimptipgsvnntpsvnkvslsssyidqytprgkqlhfssisenalginaatphlkppsqqarhregvfndldpnvltkntdnegddneenepesrfvisetpspvlksqskyegrspqfgthikeintyttnspskitrklttlprgsidkyvkempdkTFEClfPGCTKTFKRRYNIRSHIqt..Hled......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
SWI5_YEAST_2  578  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................rPYSCdhPGCDKAFVRNHDLIRHKks..Hqe.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
SWI5_YEAST_3  607  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kAYAC...PCGKKFNREDALVVHRsrmiCsggk.....kyenvvikrsprkrgrprkdgtssvssspikeninkdhngqlmfkledqlrrersydgngtgimvspmktnqr.......................................................................................................................................................................................................................................................................................................................................................................................
O14258_1      441  ...........................................................................................................mslsylssssqksfesfrqeespacnhsyqrdyetfgdskhtsfssfapfenevslnqavipsppshlqnfqdqfdyssvlktpfnplleansayflsnqislpdshsyassfdaslsppsspltcvsqihteqnfnnndafsltnsqqafseigydasnwideldsqqqvlsfpefdipeiktetcsnkdhlenfdylsssipetsgpassvlpsssqlesfnefmflpssppgldeingapsfeelnfqisqpspahpvdlsspetapnispvspfaqlvkleptspqkpsfaldssfshldvcrhtdnqkafaklsspaeyvsefekfssvcdhgldisnaninntltqqfalsapyescivtkkpepcitvkeeeqlapkiesadlsitpqvtehdskppvrisydhrcktrkqstricrippetmaslycgpeadgKYVClyNGCNKRIARKYNVESHIqt..Hlsd......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O14258_2      471  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................rPYRC..DLCKAGFVRHHDLKRHLri..Hengr.....pyvceclkrfnrldalnrhkqrnicvggvdrrqh..............................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_1  139  .........................................................................................................................................................................................................................................................................................................................................................................................................................maatllrakpkvtvsfedvsvyftktewrlldlkqrtlykqvmlenyshlvsvgfafskpnlvsqlergekpwirddgmesaarscagnriktktltskpklfgrgllrntsrsslqrrphdfrpnpivryqhsriadkRYLC..QQCGKSFSRSFNLIKHRii..Hsre......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_2  167  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kPYEC..SECGKQFQRSLALLEHQri..Hsgd......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_3  195  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kPYEC..GECGKTFTRSSNLVKHQvi..Hsse......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_4  223  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................mPFVC..RMCGKVFRRSFALLEHTri..Hsge......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_5  251  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................rPFEC..TECGKAFSRSSNLIEHQri..Hsgq......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_6  279  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kPYIC..KECGKAFKGVSQVIHHQli..Hrgd......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_7  307  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kPFTC..HEYGKAFRGLSGLSQHQrv..Hrge......................................................................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_8  335  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kPYEC..SECGRAFGRRANLFKHQvv..Hggvrlqhrtrgkgfqrkllehlrdlhgqqpqeagegssaepqpidtne.........................................................................................................................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_9  408  ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................kPQVC..ERCGQVFENKLLLCRHLri..Hdded.....dkkqkpvisstsvledksllsqhleaqpteesdsegsvvfvyaekphgpssp............................................................................................................................................................................................................................................................................................................................................................................................................
ATFA_HUMAN      5  ...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................mgddrPFVCnaPGCGQRFTNEDHLAVHKhk..Hemtl.....kfgpartdsviiadqtptptrflknceevglfnelassfehefkkaadedekkaaagpldmslpstpdikikeeepvevdssppdspasspcspplkekevtpkpvlistptptivrpgslplhlgydplhptlpsptsvitqappsnrqmgsptgslplvmhlangqtmpvlpgppvqmpsvislarpvsmvpnipgipgppvnssgsispsghpipseakmrlkatlthqvssinggcgmvvgtastmvtarpeqsqiliqhpdapspaqpqvspaqptpstggrrrrtvdedpderrqrflernraaasrcrqkrklwvsslekkaeeltsqniqlsnevtllrnevaqlkqlllahkdcpvtalqkktqgylespkesseptgspapviqhssatapsnglsvrsaaeavatsvltqmasqrtelsmpiqshvimtpqsqsagr

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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