sh3_ref6 - reference 6

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Multiple alignment of repeats only
Name                SH3
Number of sequences 4


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


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Q9Z0R6_1  720  .......................maqfptamnggpnmwaitseertkhdkqfdnlkpsggyitgdqartfflqsglpapvlaeiwalsdlnkdgkmdqqefsiamkliklklqgqqlpvvlppimkqppmfsplisarfgmgsmpnlsihqplppvapiatplssatsgtsipplmmpaplvpsvstsslpngtasliqplsipyssstlphassyslmmggfggasiqkaqslidlgsssstsstaslsgnspktgtsewavpqpsrlkyrqkfnsldkgmsgylsgfqarnallqsnlsqtqlatiwtladidgdgqlkaeefilamhltdmakagqplpltlppelvppsfrggkqvdsvngtlpsyqktqeeepqkklpvtfedkrkanyergnmelekrrqvlmeqqqreaerkaqkekeewerkqrelqeqewkkqlelekrlekqrelerqreeerrkeierreaakqelerqrrlewerlrrqellsqktreqedivrlssrkkslhleleavngkhqqisgrlqdvqirkqtqktelevldkqcdleimeikqlqqelkeyqnkliylvpekqllneriknmqlsntpdsgisllhkkssekeelcqrlkeqldaleketasklsemdsfnnqlkelresyntqqlaleqlhkikrdklkeierkrleqiqkkkledeaarkakqgkenlwresirkeeeekqkrlqeeksqdktqeeerkaeakqsetasalvnYRALYPFEARNhDEMSFSSGDIIQVDEKT.....vgepGWLYGsfq.....gKFGWFPCNYVekvlssekalspkkallpptvslsatstssqppasvtdyhnvsfsnltvnttwqqksaftrtvspgsvspihgqgqaven.....................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R6_2  854  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lkAQALCSWTAKKeNHLNFSKHDVITVLEQQ........eNWWFGevh.....gGRGWFPKSYVklipgnevqrgepealyaavtkkptstaypvtstaypvg..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R6_3  944  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................edYIALYSYSSVEpGDLTFTEGEEILVTQKD........gEWWTGsig.....eRTGIFPSNYVrpkdqenfgnasksgasnkkp................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R6_4 1016  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eiAQVTSAYAASGtEQLSLAPGQLILILKKN.......tsGWWQGelqargkkrQKGWFPASHVkllgpssertmptfhav....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R6_5 1090  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cqVIAMYDYMANNeDELNFSKGQLINVMNKD.......dpDWWQGetn.....gLTGLFPSNYVkmttdsdpsqqwcadlqaldtmqpterkrqgyiheliqteerymdddlqlvievfqkrmaeegflteadmalifvnwkelimsntkllralrvrkktggekmpvqmigdilaaelshmqayirfcscqlngatllqqktdedtdfkeflkklasdprckgmplssfllkpmqritrypllirsilentpqshvdhsslklaleraeelcsqvnegvrekensdrlewiqahvqceglaeqlifnsltnclgprkllhsgklyktksnkelhaflfndfllltylvrqfaaasgheklfnskssaqfrmyktpiflnevlvklptdpsgdepvfhishidrvytlrtdninertawvqkikgaseqyidtekkkrekayqarsqktsgigrlmvhvieatelkackpngksnpycevsmgsqsyttrtlqdtlnpkwnfncqffikdlyqdvlcltmfdrdqfspddflgrtevpvakirteqeskgpttrrlllhevptgevwvrfdlqlfeqktll
O42287_1  735  ........maqfgtpfggnldiwaitveerakhdqqfhglkptagyitgdqarnfflqsglpqpvlaqiwaladmnndgrmdqlefsiamkliklklqgyplpsilpsnmlkqpvampaaavagfgmsgivgipplaavapvpmpsipvvgmspplvssvptvpplsngapaviqshpafahsatlpksssfgrsvagsqintklqkaqsfdvpapplvvewavpsssrlkyrqlfnsqdktmsgnltgpqartilmqsslpqsqlatiwnlsdidqdgkltaeefilamhlidvamsgqplppilppeyippsfrrvrsgsglsimssvsvdqrlpeepeeeepqnadkklpvtfedkkrenfergnlelekrrqalleqqrkeqerlaqleraeqerkererqdqerkrqqdlekqlekqrelerqreeerrkeierreaakrelerqrqlewernrrqellnqrnreqedivvlkakkktlefelealndkkhqlegklqdircrlttqrheiestnksrelriaeithlqqqlqesqqllgkmipekqslidqlkqvqqnslhrdslltlkraletkeigrqqlrdqldeveketraklqeidvfnnqlkelrelynkqqfqkqqdfetekikqkelerktseldklkeedkrrmleqdklwqdrvkqeeerykfqdeekekreesvqkcevekkpeiqekpnkpfhqppepgklggqipwmntekapltinqgdvkvvyYRALYPFDARShDEITIEPGDIIMVDESQ.....tgepGWLGGelk.....gKTGWFPANYAermpesefpsttkpaaettakptvhvapspvapaaftntstnsnnwadfsstwptnntdkvesdnwdtwaaqpsltvpsagqhrqrsaftpatvtgsspspvlgqgekveg......................................................................................................................................................................................................................................................................................................................................................................................................................
O42287_2  900  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lqAQALYPWRAKKdNHLNFNKNDVITVLEQQ........dMWWFGevq.....gQKGWFPKSYVklisgplrkstsidstssespaslkrvsspafkpaiqg...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O42287_3  989  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eeYISMYTYESNEqGDLTFQQGDLIVVIKKD........gDWWTGtvg.....eKTGVFPSNYVrpkdseaagsggktgslgkkp................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O42287_4 1061  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eiAQVIASYAATApEQLTLAPGQLILIRKKN.......pgGWWEGelqargkkrQIGWFPANYVkllspgtnkstpteppkptslppt.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O42287_5 1142  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cqVIGMYDYIAQNdDELAFSKGQVINVLNKE.......dpDWWKGeln.....gHVGLFPSNYVklttdmdpsqqfrlgvkpaggipatgdrpfilfpfrdgpsllpnafqapplsvvmikfrcftaprfcpdmnvkyini........................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9UNK1_1  743  maqfptpfggsldiwaitveerakhdqqfhslkpisgfitgdqarnfffqsglpqpvlaqiwaladmnndgrmdqvefsiamkliklklqgyqlpsalppvmkqqpvaissapafgmggiasmppltavapvpmgsipvvgmsptlvssvptaavpplangappviqplpafahpaatlpksssfsrsgpgsqlntklqkaqsfdvasvppvaewavpqssrlkyrqlfnshdktmsghltgpqartilmqsslpqaqlasiwnlsdidqdgkltaeefilamhlidvamsgqplppvlppeyippsfrrvrsgsgisvisstsvdqrlpeepvledeqqqlekklpvtfedkkrenfergnlelekrrqalleqqrkeqerlaqleraeqerkererqeqerkrqlelekqlekqrelerqreeerrkeierreaakrelerqrqlewernrrqellnqrnkeqedivvlkakkktlefelealndkkhqlegklqdircrlttqrqeiestnksrelriaeithlqqqlqesqqmlgrlipekqilndqlkqvqqnslhrdslvtlkraleakelarqhlrdqldeveketrsklqeidifnnqlkelreihnkqqlqkqksmeaerlkqkeqerkiielekqkeeaqrraqerdkqwlehvqqedehqrprklheeeklkreesvkkkdgeekgkqeaqdklgrlfhqhqepakpavqapwstaekgpltisaqenvkvvyYRALYPFESRShDEITIQPGDIVMVKGEWvdesqtgepGWLGGelk.....gKTGWFPANYAekipenevpapvkpvtdstsapapklalretpaplavtssepsttpnnwadfsstwptstnekpetdnwdawaaqpsltvpsagqlrqrsaftpatatgsspspvlgqgekveg...................................................................................................................................................................................................................................................................................................................................................................................................................
Q9UNK1_2  916  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lqAQALYPWRAKKdNHLNFNKNDVITVLEQQ........dMWWFGevq.....gQKGWFPKSYVklisgpirkstsmdsgssespaslkrvaspaakpvvsg...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9UNK1_3 1005  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eeFIAMYTYESSEqGDLTFQQGDVILVTKKD........gDWWTGtvg.....dKAGVFPSNYVrlkdsegsgtagktgslgkkp................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9UNK1_4 1077  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eiAQVIASYTATGpEQLTLAPGQLILIRKKN.......pgGWWEGelqargkkrQIGWFPANYVkllspgtskitpteppkstalaav.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9UNK1_5 1158  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cqVIGMYDYTAQNdDELAFNKGQIINVLNKE.......dpDWWKGevn.....gQVGLFPSNYVklttdmdpsqq..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R4_1  741  ..maqfptpfggsldvwaitveerakhdqqflslkpiagfitgdqarnfffqsglpqpvlaqiwaladmnndgrmdqvefsiamkliklklqgyqlpstlppvmkqqpvaissapafgiggiasmppltavapvpmgsipvvgmspplvssvppaavpplangappviqplpafahpaatwpksssfsrsgpgsqlntklqkaqsfdvasappaaewavpqssrlkyrqlfnshdktmsghltgpqartilmqsslpqaqlasiwnlsdidqdgkltaeefilamhlidvamsgqplppvlppeyippsfrrvrsgsgmsvissssvdqrlpeepssedeqqpekklpvtfedkkrenfergsvelekrrqalleqqrkeqerlaqleraeqerkererqeqeakrqlelekqlekqrelerqreeerrkeierreaakrelerqrqlewernrrqellnqrnkeqegtvvlkarrktlefelealndkkhqlegklqdircrlatqrqeiestnksrelriaeithlqqqlqesqqmlgrlipekqilsdqlkqvqqnslhrdslltlkraleakelarqqlreqldeveretrsklqeidvfnnqlkelreihskqqlqkqrsleaarlkqkeqerkslelekqkedaqrrvqerdkqwlehvqqeeqprprkpheedrlkredsvrkkeaeerakpemqdkqsrlfhphqepaklatqapwsttekgpltisaqesvkvvyYRALYPFESRShDEITIQPGDIVMVDESQ.....tgepGWLGGelk.....gKTGWFPANYAekipenevptpakpvtdltsapapklalretpaplpvtssepsttpnnwadfsstwpsssnekpetdnwdtwaaqpsltvpsagqlrqrsaftpatatgsspspvlgqgekveg...................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R4_2  909  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lqAQALYPWRAKKdNHLNFNKSDVITVLEQQ........dMWWFGevq.....gQKGWFPKSYVklisgpvrkstsidtgptespaslkrvaspaakpaipg...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R4_3  998  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eeFIAMYTYESSEqGDLTFQQGDVIVVTKKD........gDWWTGtvg.....dKSGVFPSNYVrlkdsegsgtagktgslgkkp................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R4_4 1070  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eiAQVIASYAATGpEQLTLAPGQLILIRKKN.......pgGWWEGelqargkkrQIGWFPANYVkllspgtskitptelpktavqpav.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R4_5 1151  ......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cqVIGMYDYTAQNdDELAFSKGQIINVLNKE.......dpDWWKGevs.....gQVGLFPSNYVklttdmdpsqqwcsdlhlldmltpterkrqgyihelivteenyv.ndlqlvteifqkplteselltekevamifvnwkelimcnikllkalrvrkkmsgekmpvkmigdilsaqlphmqpyirfcscqlngaaliqqktdeapdfkefvkrlamdprckgmplssfilkpmqrvtrypliiknilentpenhpdhshlkhalekaeelcsqvnegvrekensdrlewiqahvqceglseqlvfnsvtnclgprkflhsgklykaksnkelygflfndfllltqitkpl.gssgtdkvfspksnlqykmyktpiflnevlvklptdpsgdepifhishidrvytlraesinertawvqkikaaselyietekkkrekaylvrsqratgigrlmvnvvegielkpcrshgksnpycevtmgsqchitktiqdtlnpkwnsncqffirdleqevlcitvferdqfspddflgrteirvadikkdqgskgpvtkclllhevptgeivvrldlqlfdep...

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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