apo_1_ref6 - reference 6

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Multiple alignment of repeats only
Name                APO
Number of sequences 20


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


                                                                                      **********************             
AP11_ONCMY_1   64  mkflalaltillaagtqa.fpmqadap..sqlehvkaalsmyiaqvkltaqrsidllddtey.keykmQLTQSLDNLQQYADATSQSLa.............
AP11_ONCMY_2   86  ...................................................................pYSEAFGTQLTDATAAVRAEVmkdveelrsqle..
AP11_ONCMY_3  119  ...................................................................pKRAELKEVLDKHIDEYRKKLe.............
AP11_ONCMY_4  141  ...................................................................pLIKEHIELRRTEMEAFRAKMe.............
AP11_ONCMY_5  163  ...................................................................pIVEELRAKVAINVEETKTKLm.............
AP11_ONCMY_6  185  ...................................................................pIVEIVRAKLTERLEELRTLAa.............
AP11_ONCMY_7  207  ...................................................................pYAEEYKEQMIKAVGEVREKVsplsedfkgqvg..
AP11_ONCMY_8  240  ...................................................................pAAEQAKQKLLAFYETISQAMk...........a.
AP12_ONCMY_1   64  mqflalaltillaaatqa.vpmqadap..sqlehvkvammeymaqvketaqrsidhlddtey.keykvQLSQSLDNLQQYAQTASESLa.............
AP12_ONCMY_2   86  ...................................................................pYSEAIGVQLTEATAAVRAEVmkdveelrsqle..
AP12_ONCMY_3  119  ...................................................................pKRAELKEVLDKHIDEYRKRLe.............
AP12_ONCMY_4  141  ...................................................................pLIKDIVEQRRTELEAFRVKIe.............
AP12_ONCMY_5  163  ...................................................................pVVEEMRAKVSANVEETKAKLm.............
AP12_ONCMY_6  185  ...................................................................pIVETVRAKLTERLEELRTLAs.............
AP12_ONCMY_7  207  ...................................................................pYAEEYKEQMVKAVGEVREKVvplttdfkgqlg..
AP12_ONCMY_8  240  ...................................................................pAAEQAKEKLMALYETISQAMk...........a.
APA1_ANAPL_1   67  mrvvvvtlallfltgtqaryfwqhdep.qapldrlrdlvdvyletvkasgkdaiaqfeasavgkqldlKLADNLDTLGAAAAKLREDMa.............
APA1_ANAPL_2   89  ...................................................................pYYKEVREMWLKDTESLRAELtkdleevkekir..
APA1_ANAPL_3  122  ...................................................................pFLDQFSAKWTEELEQYRQRLa.............
APA1_ANAPL_4  144  ...................................................................pVAEELKELTKQKVELMQQKLt.............
APA1_ANAPL_5  166  ...................................................................pVAEEARDRLRGHVEELRKNLa.............
APA1_ANAPL_6  188  ...................................................................pYSDELRQKLSQKLEEIREKGi.............
APA1_ANAPL_7  210  ...................................................................pQAAEYQAKVVEQLSNLREKMtplvqdfkerlt..
APA1_ANAPL_8  243  ...................................................................pYAENLKTRFISLLDELQKTVa.............
APA1_BOVIN_1   67  mkavvltlavlfltgsqarhfwqqddp.qsswdrvkdfatvyveaikdsgrdyvaqfeasalgkqlnlKLLDNWDTLASTLSKVREQLg.............
APA1_BOVIN_2   89  ...................................................................pVTQEFWDNLEKETASLRQEMhkdleevkqkvq..
APA1_BOVIN_3  122  ...................................................................pYLDEFQKKWHEEVEIYRQKVa.............
APA1_BOVIN_4  144  ...................................................................pLGEEFREGARQKVQELQDKLs.............
APA1_BOVIN_5  166  ...................................................................pLAQELRDRARAHVETLRQQLa.............
APA1_BOVIN_6  188  ...................................................................pYSDDLRQRLTARLEALKEGG..............
APA1_BOVIN_7  209  ...................................................................gSLAEYHAKASEQLKALGEKAkpvledlrqgll..
APA1_BOVIN_8  242  ...................................................................pVLESLKVSILAAIDEASKKLn...........aq
APA1_BRARE_1   64  mkfvalaltlllalgsqa.nlfqadap..tqlehykaaalvylnqvkdqaekaldnldgtdy.eqyklQLSESLTKLQEYAQTTSQALt.............
APA1_BRARE_2   86  ...................................................................pYAETISTQLMENTKQLRERVmtdvedlrskle..
APA1_BRARE_3  119  ...................................................................pHRAELYTALQKHIDEYREKLe.............
APA1_BRARE_4  141  ...................................................................pVFQEYSALNRQNAEQLRAKLe.............
APA1_BRARE_5  163  ...................................................................pLMDDIRKAFESNIEETKSKVv.............
APA1_BRARE_6  185  ...................................................................pMVEAVRTKLTERLEDLRTMAa.............
APA1_BRARE_7  207  ...................................................................pYAEEYKEQLVKAVEEAREKIaphtqdlqtrme..
APA1_BRARE_8  240  ...................................................................pYMENVRTTFAQMYETIAKAIq...........a.
APA1_CANFA_1   67  mkaalltlavlfltgsqarhfwqqdep.qspwdrvkdlatvyvdavkdsgrdyvaqfeasalgkqlnlKLLDNWDSLSSTVTKLREQIg.............
APA1_CANFA_2   89  ...................................................................pVTQEFWDNLEKETEVLRQEMskdleevkqkvq..
APA1_CANFA_3  122  ...................................................................pYLDDFQKKWQEEVELYRQKVa.............
APA1_CANFA_4  144  ...................................................................pLGSELREGARQKLQELQEKLs.............
APA1_CANFA_5  166  ...................................................................pLAEELRDRARTHVDALRAQLa.............
APA1_CANFA_6  188  ...................................................................pYSDDLRERLAARLEALKEGGg.............
APA1_CANFA_7  210  ...................................................................aSLAEYHARASEQLSALGEKArpaledlrqgll..
APA1_CANFA_8  243  ...................................................................pVLESFKVSLLAAIDEATKKLn...........aq
APA1_CHICK_1   67  mrgvlvtlavlfltgtqarsfwqhdep.qtpldrirdmvdvyletvkasgkdaiaqfessavgkqldlKLADNLDTLSAAAAKLREDMa.............
APA1_CHICK_2   89  ...................................................................pYYKEVREMWLKDTEALRAELtkdleevkekir..
APA1_CHICK_3  122  ...................................................................pFLDQFSAKWTEELEQYRQRLt.............
APA1_CHICK_4  144  ...................................................................pVAQELKELTKQKVELMQAKLt.............
APA1_CHICK_5  166  ...................................................................pVAEEARDRLRGHVEELRKNLa.............
APA1_CHICK_6  188  ...................................................................pYSDELRQKLSQKLEEIREKGi.............
APA1_CHICK_7  210  ...................................................................pQASEYQAKVMEQLSNLREKMtplvqefrerlt..
APA1_CHICK_8  243  ...................................................................pYAENLKNRLISFLDELQKSVa.............
APA1_COTJA_1   67  mrgvlvtlavlfltgtqarsfwqhddp.qtpldrirdmldvyletvkasgkdaisqfessavgkqldlKLADNLDTLSAAAAKLREDMt.............
APA1_COTJA_2   89  ...................................................................pYYREVREMWLKDTEALRAELtkdleevkekir..
APA1_COTJA_3  122  ...................................................................pFLDQFSAKWTEEVEQYRQRLa.............
APA1_COTJA_4  144  ...................................................................pVAQELKDLTKQKVELMQAKLt.............
APA1_COTJA_5  166  ...................................................................pVAEEVRDRLREQVEELRKNLa.............
APA1_COTJA_6  188  ...................................................................pYSSELRQKLSQKLEEIRERGi.............
APA1_COTJA_7  210  ...................................................................pQASEYQAKVVEQLSNLREKMtplvqefkerlt..
APA1_COTJA_8  243  ...................................................................pYAENLKNRLIDLLDEVQKTMa.............
APA1_HUMAN_1   68  mkaavltlavlfltgsqarhfwqqdeppqspwdrvkdlatvyvdvlkdsgrdyvsqfegsalgkqlnlKLLDNWDSVTSTFSKLREQLg.............
APA1_HUMAN_2   90  ...................................................................pVTQEFWDNLEKETEGLRQEMskdleevkakvq..
APA1_HUMAN_3  123  ...................................................................pYLDDFQKKWQEEMELYRQKVe.............
APA1_HUMAN_4  145  ...................................................................pLRAELQEGARQKLHELQEKLs.............
APA1_HUMAN_5  167  ...................................................................pLGEEMRDRARAHVDALRTHLa.............
APA1_HUMAN_6  189  ...................................................................pYSDELRQRLAARLEALKENGg.............
APA1_HUMAN_7  211  ...................................................................aRLAEYHAKATEHLSTLSEKAkpaledlrqgll..
APA1_HUMAN_8  244  ...................................................................pVLESFKVSFLSALEEYTKKLn...........tq
APA1_MACFA_1   68  mkatvltlavlfltgsqarhfwqqdeppqtpwdrvkdlvtvyvealkdsgkdyvsqfegsalgkqlnlKLLDNWDSVTSTVSKLREQLg.............
APA1_MACFA_2   90  ...................................................................pVTQEFWDNLEKETEGLRQEMskdleevkakvq..
APA1_MACFA_3  123  ...................................................................pYLDDFQKKWQEEMELYRQKVe.............
APA1_MACFA_4  145  ...................................................................pLRAELHEGTRQKLHELHEKLs.............
APA1_MACFA_5  167  ...................................................................pLGEEVRDRARAHVDALRTHLa.............
APA1_MACFA_6  189  ...................................................................pYSDELRQRLAARLEALKENGg.............
APA1_MACFA_7  211  ...................................................................aRLAEYHAKASEHLSTLSEKAkpaledlrqgll..
APA1_MACFA_8  244  ...................................................................pVLESFKVSFLSALEEYTKKLs...........tq
APA1_MOUSE_1   67  mkavvlavalvfltgsqawhvwqqdep.qsqwdkvkdfanvyvdavkdsgrdyvsqfessslgqqlnlNLLENWDTLGSTVSQLQERLg.............
APA1_MOUSE_2   89  ...................................................................pLTRDFWDNLEKETDWVRQEMnkdleevkqkvq..
APA1_MOUSE_3  122  ...................................................................pYLDEFQKKWKEDVELYRQKVa.............
APA1_MOUSE_4  144  ...................................................................pLGAELQESARQKLQELQGRLs.............
APA1_MOUSE_5  166  ...................................................................pVAEEFRDRMRTHVDSLRTQLa.............
APA1_MOUSE_6  188  ...................................................................pHSEQMRESLAQRLAELKSN...............
APA1_MOUSE_7  208  ...................................................................pTLNEYHTRAKTHLKTLGEKArpaledlrhslm..
APA1_MOUSE_8  241  ...................................................................pMLETLKTKAQSVIDKASETLt...........aq
APA1_PIG_1     67  mkavvltlavlfltgsqarhfwqqddp.qspwdrvkdfatvyvdaikdsgrdyvaqfeasalgkhlnlKLLDNWDSLGSTFTKVREQLg.............
APA1_PIG_2     89  ...................................................................pVTQEFWDNLEKETEALRQEMskdleevkkkvq..
APA1_PIG_3    122  ...................................................................pYLDDFQNKWQEEMETYRQKMa.............
APA1_PIG_4    144  ...................................................................pLGAEFREGARQKVQELQEKLs.............
APA1_PIG_5    166  ...................................................................pLAEELRDRLRAHVEALRQHVa.............
APA1_PIG_6    188  ...................................................................pYSDDLRQRMAARFEALKEGG..............
APA1_PIG_7    209  ...................................................................gSLAEYQAKAQEQLKALGEKAkpaledlrqgll..
APA1_PIG_8    242  ...................................................................pVLENLKVSILAAIDEASKKLn...........aq
APA1_RABIT_1   67  mkavvltlavlfltgsqarhfwqrdep.rsswdkikdfatvyvdtvkdsgreyvaqfeasafgkqlnlKLLDNWDSLSSTVSKLQEQLg.............
APA1_RABIT_2   89  ...................................................................pVTQEFWDNLEKETEGLREEMnkdlqevrqkvq..
APA1_RABIT_3  122  ...................................................................pYLDEFQKKWQEEVERYRQKVe.............
APA1_RABIT_4  144  ...................................................................pLGAELRESARQKLTELQEKLs.............
APA1_RABIT_5  166  ...................................................................pLAEELRDSARTHVDTLRTKLa.............
APA1_RABIT_6  188  ...................................................................pYSNELQQRLAARLESIKEGGg.............
APA1_RABIT_7  210  ...................................................................aSLAEYQAKAREHLSVLSEKArpaledlrqgll..
APA1_RABIT_8  243  ...................................................................pVLESFKASVQNVLDEATKKLn...........tq
APA1_RAT_1     67  mkaavlavalvfltgcqawefwqqdep.qsqwdrvkdfatvyvdavkdsgrdyvsqfesstlgkqlnlNLLDNWDTLGSTVGRLQEQLg.............
APA1_RAT_2     89  ...................................................................pVTQEFWANLEKETDWLRNEMnkdlenvkqkmq..
APA1_RAT_3    122  ...................................................................pHLDEFQEKWNEEVEAYRQKLe.............
APA1_RAT_4    144  ...................................................................pLGTELHKNAK....EMQRHLk.............
APA1_RAT_5    162  ...................................................................vVAEEFRDRMRVNADALRAKFg.............
APA1_RAT_6    184  ...................................................................lYSDQMRENLAQRLTEIRNH...............
APA1_RAT_7    204  ...................................................................pTLIEYHTKAGDHLRTLGEKAkpalddlgqglm..
APA1_RAT_8    237  ...................................................................pVLEAWKAKIMSMIDEAKKKLn...........a.
APA1_SALSA_1   64  mkflvlaltillaagtqa.fpmqadap..sqlehvkaalnmyiaqvkltaqrsidllddtey.keykmQLSQSLDNLQQFADSTSKSW..............
APA1_SALSA_2   85  ...................................................................pPTPRSSAPSCDATATVRAEVmkdvedvrtqle..
APA1_SALSA_3  118  ...................................................................pKRAELTEVLNKHIDEYRKKLe.............
APA1_SALSA_4  140  ...................................................................pLIKQHIELRRTEMDAFRAKId.............
APA1_SALSA_5  162  ...................................................................pVVEEMRAKVAVNVEETKTKLm.............
APA1_SALSA_6  184  ...................................................................pIVEIVRAKLTERLEELRTLAa.............
APA1_SALSA_7  206  ...................................................................pYAEEYKEQMFKAVGEVREKVaplsedfkarwa..
APA1_SALSA_8  239  ...................................................................pPPRRPSKSSWLSTRPSARP...............
APA1_SALTR_1   64  mkflalaltillaaatqa.vpmqadap..sqlehvkvammeymaqvketgqrsidllddtef.keykvQLSQSLDNLQQYAQTTSQSLa.............
APA1_SALTR_2   86  ...................................................................pYSEAFGAQLTDAAAAVRAEVmkdvedvrtqle..
APA1_SALTR_3  119  ...................................................................pKRAELKEVLDKHIDEYRKKLe.............
APA1_SALTR_4  141  ...................................................................pLIKEIVEQRRTELEAFRVKMe.............
APA1_SALTR_5  163  ...................................................................pVVEEMRAKVSTNVEETKAKLm.............
APA1_SALTR_6  185  ...................................................................pIVETVRAKLTERLEELRTLAa.............
APA1_SALTR_7  207  ...................................................................pYAEEYKEQMFKAVGEVREKVgpltndfkgqvg..
APA1_SALTR_8  240  ...................................................................pAAEQAKEKLMDFYETISQAMk...........a.
APA1_SPAAU_1   64  mkfaalalalllavgsha.asmqadap..sqldharavldvyltqvkdmslravnqlddpqy.aefktNLAQRIEEMYTQIKTLQGSVs.............
APA1_SPAAU_2   86  ...................................................................pMTDSFYNTVMEVTKDTRESLnvdlealkssla..
APA1_SPAAU_3  119  ...................................................................pQNEQLKQVIEKHLNDYRTLLt.............
APA1_SPAAU_4  141  ...................................................................pIYNDYKTKHDEEMAALKTRLe.............
APA1_SPAAU_5  163  ...................................................................pVMEELRTKIQANVEETKAVLm.............
APA1_SPAAU_6  185  ...................................................................pMVETVRTKVTERLESLREVVq.............
APA1_SPAAU_7  207  ...................................................................pYVQEYKEQMKQMY.DQAQTVd..tdalrtkit..
APA1_SPAAU_8  237  ...................................................................pLVEEIKVKMNAIFEIIAASVt...........ks
APA1_TUPGB_1   67  mkavvltlavlfltgsqarhfwqqdep.qsswdrvrdlanvyvdavkesgreyvsqleasalgkqlnlKLVDNWDTLGSTFQKVHEHLg.............
APA1_TUPGB_2   89  ...................................................................pVAQEFWEKLEKETEELRREInkdledvrqktq..
APA1_TUPGB_3  122  ...................................................................pFLDEIQKKWQEDLERYRQKVe.............
APA1_TUPGB_4  144  ...................................................................pLSAQLREGARQKLMELQEQVt.............
APA1_TUPGB_5  166  ...................................................................pLGEDLRDSVRAYADTLRTQLa.............
APA1_TUPGB_6  188  ...................................................................pYSEQMRKTLGARLEAIKEGGs.............
APA1_TUPGB_7  210  ...................................................................aSLAEYHAKASEQLSALGEKAkpvledihqglm..
APA1_TUPGB_8  243  ...................................................................pMWESFKTGVLNVIDEAAKKLt...........a.
Q9TS49-F_1     43  ........................dea.ksywdqikdmltvyvdtakdsgkdyltsldtsalgqqlnkKLADNWDTVSSALLKAREQMk.............
Q9TS49-F_2     65  ...................................................................pIAMEFWGNLEKDTEGLRQTVskdlelvkekvq..
Q9TS49-F_3     98  ...................................................................pYLDSFQKKVEEELELYRQKVa.............
Q9TS49-F_4    120  ...................................................................pLSAEWREQARQKAQELQQKAg.............
Q9TS49-F_5    142  ...................................................................eLGQQHRDRVRTHVDALRTDLa.............
Q9TS49-F_6    164  ...................................................................pYGEEARKLLLQRLQDIKAKS..............
Q9TS49-F_7    185  ...................................................................gDLAEYQTKLSEHLKSFGEKAqptlqdlrhgle..
Q9TS49-F_8    218  ...................................................................pLWEGIKAGAMSMLEELGKKLn...........sq
Q9Z2L4_1       67  mktvvlavavlfltgsqarhfwqrddp.qtpwdrvkdfatvyvdavkdsgreyvsqfetsalgkqlnlNLLENWDTLGSTVGRLQEQLg.............
Q9Z2L4_2       89  ...................................................................pVTQEFWDNLEKETEWLRREMnkdleevkakvq..
Q9Z2L4_3      122  ...................................................................pYLDQFQTKWQEEVALYRQKMe.............
Q9Z2L4_4      144  ...................................................................pLGAELRDGARQKLQELQEKLt.............
Q9Z2L4_5      166  ...................................................................pLGEDLRDRMRHHVDALRTKMt.............
Q9Z2L4_6      188  ...................................................................pYSDQMRDRLAERLAQLKDS...............
Q9Z2L4_7      208  ...................................................................pTLAEYHTKAADHLKAFGEKAkpaledlrqglm..
Q9Z2L4_8      241  ...................................................................pVFESFKTRIMSMVEEASKKLn...........aq

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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