apo_2_ref6 - reference 6

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Multiple alignment of complete sequences
Multiple alignment of repeats only

Number of sequences              13

Key:

A	APO repeat - type A
B	APO repeat - type B
C	APO repeat - type C
D	APO repeat - type D
E	APO repeat - type E
F	APO repeat - type F
G	APO repeat - type G
H	APO repeat - type H
I	APO repeat - type I
J	APO repeat - type J
K	APO repeat - type K
L	APO repeat - type L
M	APO repeat - type M
U	APO repeat - type unknown

Sequence Name	# Repeats
			80	101		102	123		135	156		157	178		179	200		201	222		223	244		245	266		285	306
ape_human	9		D			B			B			B			B			G			H			B			B
			79	100		101	122		134	155		156	177		178	199		200	221		222	243		244	265		284	305
APE_BOVIN	9		D			B			B			B			B			G			H			B			B
			67	88		89	110		122	143		144	165		166	187		188	209		210	231		232	253		254	275
APE_BRARE	9		D			B			B			B			B			B			B			B			B
			74	90		90	111		123	144		145	166		167	188		189	210		211	232		233	254		273	294
APE_CANFA-F	9		D			B			B			B			B			G			H			B			B
			74	95		96	117		129	150		151	172		173	194		195	211		212	233		234	255		267	288
APE_CAVPO	9		D			B			B			B			B			G			H			B			B
			67	88		89	110		122	143		144	165		166	187		188	209		210	231		232	253		254	275
Q9PT02	9		D			B			B			B			B			B			B			B			B
			15	36		37	58		70	91		92	113		114	135		136	157		158	179		180	201		202	223
Q9PT73-F	9		D			B			B			B			B			B			B			B			B
			80	101		102	123		135	156		157	178		179	200		201	222		223	244		245	266		285	306
ape_macfa	9		D			B			B			B			B			G			H			B			B
			72	93		94	115		127	148		149	170		171	192		193	214		215	236		237	258		277	298
ape_mouse	9		D			B			B			B			B			G			H			B			B
			80	101		102	123		135	156		157	178		179	200		201	222		223	244		245	266		285	306
ape_papan	9		D			B			B			B			B			G			H			B			B
			79	100		101	122		134	155		156	177		178	199		200	221		222	243		244	265		284	305
ape_pig	9		D			B			B			B			B			G			H			B			B
			74	95		96	116		128	149		150	171		172	193		194	215		216	237		238	259		278	299
ape_rabit	9		D			B			B			B			B			G			H			B			B
			72	93		94	115		127	148		149	170		171	192		193	214		215	236		237	258		277	298
ape_rat	9		D			B			B			B			B			G			H			B			B

Key:

A	APO repeat - type A
B	APO repeat - type B
C	APO repeat - type C
D	APO repeat - type D
E	APO repeat - type E
F	APO repeat - type F
G	APO repeat - type G
H	APO repeat - type H
I	APO repeat - type I
J	APO repeat - type J
K	APO repeat - type K
L	APO repeat - type L
M	APO repeat - type M
U	APO repeat - type unknown

Multiple alignment of complete sequences
Multiple alignment of repeats only

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