sh3_1_ref6 - reference 6

Back to Schema

Back to Index
Multiple alignment of repeats only
Name                SH3
Number of sequences 5


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       *******************************************************************                                                                                                                                                                                                                                                                                                                                    
O60592_1      253  ........................................................................................................................................................................................................................................................................................................................................................................................................................................mntgrdsqspdspkgfrsvrpnlqdkrsptqsqitvngnsggavspmsyyqrpfspsayslpaslnssivmqhgtsldstdtypqhaqsldgttsssiplyrsseeekrvtvikaphypgigpvdesgiptairttvdrpkdwyktmfkqihmvhkpdddtdmyntpytynaglynppysaqshpaaktqtyrplskshsdnspnafkdasspvppphvpppvpplrprdrsstekhdwdppdrkvdtrkfrsePRSIFEYEPGKs....SILQHERpTDRINPDDIDlenePWYKFfse.....lEFGRPPPKKPldyvqdhssgvfneaslyqssidrslerpmssasmasdfrkrrksepavgpprglgdqsasrtspgrvdlpgssttltksftssspsspsrakdresprsysstltdmgrsaprerrgtpekek...........................................................................................................................................................................................................
O60592_2      432  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lpAKAVYDFKAQTs....KELSFKK.GDTVYILRKI..dqNWYEGehh.....gRVGIFPISYVekltppekaqparppppaqpgei................................................................................................................................................................................................................................................................................................................
O60592_3      507  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................geAIAKYNFNADTn....VELSLRK.GDRVILLKRV..dqNWYEGkipgt...nRQGIFPVSYVevvkkntkgaedypdppiphsyssdrihslssnkpqrpvftheniqggg......................................................................................................................................................................................................................................................................................
O60592_4      610  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................epFQALYNYTPRNe....DELELRE.SDVIDVMEKC..ddGWFVGtsrrt...kFFGTFPGNYVkrl....................................................................................................................................................................................................................................................................................................................................
O61618_1      677  mnsavdawavtprerlkyqeqfralqpqagfvtgaqakgfflqsqlpplilgqiwaladtdsdgkmninefsiacklinlklrgmdvpkvlppsllssltgdvpsmtprgstsslspldplkgivpavapvvpvvappvavatvisppgvsvpsgptpptsnppsrhtsiserapsiesvnqgewavqaaqkrkytqvfnandrtrsgyltgsqargvlvqsklpqvtlaqiwtlsdidgdgrlncdefilamflcekamagekipvtlpqewvppnlrkiksrpgsvsgvvsrpgsqpasrhasvssqsgvgvvdadptaglpgqtsfedkrkenyvkgqaeldrrrkimedqqrkereererkereeadkrekarleaerkqqeelerqlqrqreiemekeeqrkreleakeaarkelekqrqqeweqariaemnaqkereqervlkqkahntqlnvelstlnekikelsqricdtragvtnvktvidgmrtqrdtsmsemsqlkarikeqnakllqltqerakweakskasgaalggenaqqeqlnaafahkqliinqikdkveniskeieskkedintndvqmselkaelsalitkcedlykeydvqrtsvlelkynrknetsvssawdtgsssaweetgttvtdpyavasndisalaapavdlggpapegfvkYQAVYEFNARNa....EEITFVP.GDIILVPLEQnaepGWLAGein.....gHTGWFPESYVeklevgevapvaaveapvdaqvadtyndnintssipaasadltaagdv.......................................................................................................................................................................................................................................................................................
O61618_2      779  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eyYIAAYPYESAEe....GDLSFSA.GEMVMVIKKE...gEWWTGtig.....sRTGMFPSNYVqkadvgtastaaaepvesldqettlngnaaytaapveaqeqvyqplpvqepseqpisspgvgaeeahedldtevsqintqsktqssepaesysrpmsrtssmtpgmrakrs........................................................................................................................................................................................................................
O61618_3      941  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eiAQVIAPYEATSt....EQLSLTR.GQLIMIRKKT..dsGWWEGelqakgrrrQIGWFPATYVkvlqggrnsgrntpvsgsriemteqil............................................................................................................................................................................................................................................................................................................
O61618_4     1025  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................dkVIALYPYKAQNd....DELSFDK.DDIISVLGRD..epEWWRGeln.....gLSGLFPSNYVgpfvtsgkpakangttkk.....................................................................................................................................................................................................................................................................................................................
ITSN_HUMAN_1  119  ..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................meaerlkqkeqerkiielekqkeeaqrraqerdkqwlehvqqedehqrprklheeeklkreesvkkkdgeekgkqeaqdklgrlfhqhqepakpavqapwstaekgpltisaqenvkvvyYRALYPFESRSh....DEITIQP.GDIVMVDESQtgepGWLGGelk.....gKTGWFPANYAekipenevpapvkpvtdstsapapklalretpaplavtssepsttpnnwadfsstwptstnekpetdnwdawaaqpsltvpsagqlrqrsaftpatatgsspspvlgqgekveg.....................................................................................................................................................................................................................
ITSN_HUMAN_2  287  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................lqAQALYPWRAKKd....NHLNFNK.NDVITVLEQQ...dMWWFGevq.....gQKGWFPKSYVklisgpirkstsmdsgssespaslkrvaspaakpvvsg.................................................................................................................................................................................................................................................................................................
ITSN_HUMAN_3  376  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................eiAQVIASYTATGp....EQLTLAP.GQLILIRKKN..pgGWWEGelqargkkrQIGWFPANYVkllspgtskitpteppkstalaav...............................................................................................................................................................................................................................................................................................................
ITSN_HUMAN_4  457  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................cqVIGMYDYTAQNd....DELAFNK.GQIINVLNKE..dpDWWKGevn.....gQVGLFPSNYVklttdmdpsqq............................................................................................................................................................................................................................................................................................................................
O08635_1      362  ...........................................................................................................................................................................................................................................................................................................................mrlleedpwrrarygeenpnscspafaaekisprlsvasqakafrslgeglpsnppvpapqskalgdidlisfdddvlptsgspaeeptgsetvldpfqlptkteatkeravqpaptrkptviripakpgkclheepqsppplpaekpvgnthsavsgrpshsdrtrnpeleqasesgglvqgpprlpprpvhgkvipvwrpppkgaperppppklpaskssnknlpfnrsssdmdlqkkqshfvsglskaksqifknqdpvlpprpkpghplyrkymlsvphgianedivsrnptelsckrgdvlvilkqaennylecqrgegtgrvhpsqmkivtplderprgrpndsghsqkpvdsgaphAVALHDFPAEQa....DDLSLTS.GEIVYLLEKI..daEWYRGkcr.....nQTGVFPANYVkvivdipegrsgkresfsshcakg...............................................................................................................................................................................................................................................................................................................
O08635_2      438  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................prCVARFEYIGDQk....DELSFSE.GEVIILTEYV..neEWGRGeir.....dRSGIFPLNFVelvgdhptsganilstkvppktknedpgsnsqdssppg.................................................................................................................................................................................................................................................................................................
O08635_3      528  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ewCKALHSFTAETs....EDLPFKR.GDRILILERL..dsDWYRGrlh.....dREGIFPAVFVqpcpaeakgvasaipkg......................................................................................................................................................................................................................................................................................................................
O08635_4      597  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................rkVKALYDFLGENe....DELSFKA.GDVITELEPI..ddAWMRGelm.....gRAGMFPKNYVqflqvs.................................................................................................................................................................................................................................................................................................................................
O70254_1      137  ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................mdesalldllecpvclerldasakvlpcqhtfckrcllgivgsrnelrcpecrtlvgsgvdelpsnillvrlldgikqrpwkpgpgggggttctntlraqgstvvncgskdlqssqcgqqprvqawsppvrgipqlpcAKALYNYEGKEp....GDLKFSK.GDTIILRRQV..deNWYHGevs.....gVHGFFPTNFVqiikplpqpp.............................................................................................................................................................................................................................................................................................................................
O70254_2      199  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................pqCKALYDFEVKDkeadkDCLPFAK.DDVLTVIRRV..deNWAEGmla.....dKIGIFPISYVefnsaakqliewdkppvpgvdtaecpsataqstsaskhpdtkkntrkrhsftsltmankssqgsqnrhsmeisppvlisssnptaaariselsglscsapsqvhisttglivtpppsspvttgpaftfpsdvpyqaalgsmnpplppppllaatvlastpsgataavaaaaaaaaaagmgprpvmgsseqiahlrpqtrp...............................................................................................................................
O70254_3      455  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................svYVAIYPYTPRKe....DELELRK.GEMFLVFERC..qdGWYKGtsmht...sKIGVFPGNYVapvtravtnasqakvsmstagqasrgvtmvspstaggptqkpqgngvagnpsvvptavvsaahiqtspqakvllhmsgqmtvnqarnavrtvaahsqerptaavtpiqvqnaaclgpasvglphhslasqplppmagpaahgaavsisrtnapmacaagaslaspnmtsamletepsgrtvtilpglptspesaasacgnssagkpdkdskkekkgllkllsgastkrkprvsppasptldvelgageaplqgavgpelplggshgrvgscptdgdgpvaagtaalaqdafhrktssldsavpiappprqacsslgpvmnearpvvc
O70254_4      836  ....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................erHRVVVSYPPQSe....AELELKE.GDIVFVHKKR..edGWFKGtlqrn...gKTGLFPGSFVeni....................................................................................................................................................................................................................................................................................................................................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
Back to Schema

Back to Index