zf_2_ref6 - reference 6

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Multiple alignment of repeats only
Name                ZincFinger
Number of sequences 12


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


                                                                                                                                                                                                         ********************************                                                                                                                                                                                                                                                                                                                       
TF3A_HUMAN_1   96  .......................................................................................mrssgadagrclvtarapgsvpasregsagsrgpgarfparvsargsapgpglggagaldppavvaesvssltiadafiaagessaptpprpalprRFICsf.PDCSAN.YSKAWKLDAHLck...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_HUMAN_2  126  ......................................................................................................................................................................................rPFVCdy.EGCGKA.FIRDYHLSRHIlt...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_HUMAN_3  156  ......................................................................................................................................................................................kPFVCaa.NGCDQK.FNTKSNLKKHFerk..Henqq...................................................................................................................................................................................................................................................................................................................
TF3A_HUMAN_4  188  ......................................................................................................................................................................................kQYICsf.EDCKKT.FKKHQQLKIHQcq...Ntne....................................................................................................................................................................................................................................................................................................................
TF3A_HUMAN_5  218  ......................................................................................................................................................................................pLFKCtq.EGCGKH.FASPSKLKRHAka...H.......................................................................................................................................................................................................................................................................................................................
TF3A_HUMAN_6  245  ......................................................................................................................................................................................eGYVCq..KGCSFV.AKTWTELLKHVret..Hk......................................................................................................................................................................................................................................................................................................................
TF3A_HUMAN_7  273  ......................................................................................................................................................................................eEILC...EVCRKT.FKRKDYLKQHMkt...Haper...................................................................................................................................................................................................................................................................................................................
TF3A_HUMAN_8  302  ......................................................................................................................................................................................dVCRCpr.EGCGRT.YTTVFNLQSHIlsf..Hees....................................................................................................................................................................................................................................................................................................................
TF3A_HUMAN_9  333  ......................................................................................................................................................................................rPFVCeh.AGCGKT.FAMKQSLTRHAvv...Hdpdk.....kkmklkvkksrekrslashlsgyippkrkqgqglslcqngespncvedkmlstvavltlg..................................................................................................................................................................................................................................................
TF3A_XENLA_1   33  ......................................................................................................................................................maakvastsseeaegslvtegemgekalpvvykRYICsf.ADCGAA.YNKNWKLQAHLck...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_XENLA_2   63  ......................................................................................................................................................................................kPFPCke.EGCEKG.FTSLHHLTRHSlt...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_XENLA_3   93  ......................................................................................................................................................................................kNFTCds.DGCDLR.FTTKANMKKHFnrf..Hniki...................................................................................................................................................................................................................................................................................................................
TF3A_XENLA_4  125  ......................................................................................................................................................................................cVYVChf.ENCGKA.FKKHNQLKVHQfs...Htqq....................................................................................................................................................................................................................................................................................................................
TF3A_XENLA_5  155  ......................................................................................................................................................................................lPYECph.EGCDKR.FSLPSRLKRHEkv...H.......................................................................................................................................................................................................................................................................................................................
TF3A_XENLA_6  182  ......................................................................................................................................................................................aGYPCkkdDSCSFV.GKTWTLYLKHVaec..Hq......................................................................................................................................................................................................................................................................................................................
TF3A_XENLA_7  212  ......................................................................................................................................................................................dLAVC...DVCNRK.FRHKDYLRDHQkt...Heker...................................................................................................................................................................................................................................................................................................................
TF3A_XENLA_8  241  ......................................................................................................................................................................................tVYLCpr.DGCDRS.YTTAFNLRSHIqsf..Heeq....................................................................................................................................................................................................................................................................................................................
TF3A_XENLA_9  272  ......................................................................................................................................................................................rPFVCeh.AGCGKC.FAMKKSLERHSvv...Hdpek.....rklkekcprpkrslasrltgyippkskeknasvsgtektdslvknkpsgtetngslvldkltiq..............................................................................................................................................................................................................................................
P43_XENBO_1    13  ..........................................................................................................................................................................mqnvgptepsksqVFRCpa.AGCKAV.YRKEGKLRDHMag...Hseq....................................................................................................................................................................................................................................................................................................................
P43_XENBO_2    43  ......................................................................................................................................................................................kLWKCgk.KDCGKM.FARKRQIQKHMkr...Hltl....................................................................................................................................................................................................................................................................................................................
P43_XENBO_3    73  ......................................................................................................................................................................................kKHSCpt.AGCKMT.FSTKKSLSRHKlyk..Hgda....................................................................................................................................................................................................................................................................................................................
P43_XENBO_4   104  ......................................................................................................................................................................................vPLKCsv.PGCKRS.FRKKRALRIHVse...Hsne....................................................................................................................................................................................................................................................................................................................
P43_XENBO_5   134  ......................................................................................................................................................................................pLSVCdv.PGCGWK.STSAAKLAAHHrr...H.......................................................................................................................................................................................................................................................................................................................
P43_XENBO_6   161  ......................................................................................................................................................................................gGYRCsy.EDCQTV.SPTWTALQTHLkk...Hp......................................................................................................................................................................................................................................................................................................................
P43_XENBO_7   189  ......................................................................................................................................................................................lELQC...AACKKP.FKKASALRRHKat...Haknp...................................................................................................................................................................................................................................................................................................................
P43_XENBO_8   218  ......................................................................................................................................................................................lQLPCpr.QDCDKI.FSTVFNLTHHLrkv..Hlcl....................................................................................................................................................................................................................................................................................................................
P43_XENBO_9   249  ......................................................................................................................................................................................qTHRCph.SNCTRS.FAMRESLVRHLvv...Hdper.....kklklkfgrrpskflgrgtrcptpvveedlshlfsrkllfhyktrletnlsglfnerqlrepaepevnlsglfqlpqgrpkaekaa........................................................................................................................................................................................................................
TF3A_ICTPU_1   10  .............................................................................................................................................................................mgerfkdpakNFVCsf.LNCKAS.FSKAWKLEAHYck...Htgl....................................................................................................................................................................................................................................................................................................................
TF3A_ICTPU_2   40  ......................................................................................................................................................................................rPFAC...DRCDKT.FCTRCQLTRHNls...Hsgk....................................................................................................................................................................................................................................................................................................................
TF3A_ICTPU_3   68  ......................................................................................................................................................................................kPYQCle.DGCSES.FISTAGLKNHVerv..Hqhke...................................................................................................................................................................................................................................................................................................................
TF3A_ICTPU_4  100  ......................................................................................................................................................................................kHYVCdy.EGCAKE.FRKKKQLRSHKce...Hmnq....................................................................................................................................................................................................................................................................................................................
TF3A_ICTPU_5  130  ......................................................................................................................................................................................lPFECqy.EGCGKK.YTTSKKLQKHEkv...H.......................................................................................................................................................................................................................................................................................................................
TF3A_ICTPU_6  157  ......................................................................................................................................................................................dVYPCae.EGCDFQ.GRMWTEYQAHRkaa..Hr......................................................................................................................................................................................................................................................................................................................
TF3A_ICTPU_7  186  ......................................................................................................................................................................................eALQC...DSCAKV.FHKAWFLKKHKlfv..Hlgvr...................................................................................................................................................................................................................................................................................................................
TF3A_ICTPU_8  216  ......................................................................................................................................................................................rVFKCtk.EGCQKT.YTTHFNLQNHIlsf..Hegi....................................................................................................................................................................................................................................................................................................................
TF3A_ICTPU_9  247  ......................................................................................................................................................................................rSFICph.DGCGKA.FAMEGSLKRHAvv...Hdpqk.....kklqkktkrgrkkklepktnvsddselpaqlhglslntstsqnnp.................................................................................................................................................................................................................................................................
TF3A_BUFAM_1   10  .............................................................................................................................................................................mgeklpvvykRFICsf.PDCNAT.YNKNRKLQAHLck...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_BUFAM_2   40  ......................................................................................................................................................................................rPFPCty.EGCEKG.FVTLHHLNRHVls...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_BUFAM_3   70  ......................................................................................................................................................................................kPCKCet.ENCNLA.FTTASNMRLHFkra..Hsspa...................................................................................................................................................................................................................................................................................................................
TF3A_BUFAM_4  102  ......................................................................................................................................................................................qVYVCyf.ADCGQQ.FRKHNQLKIHQyi...Htnq....................................................................................................................................................................................................................................................................................................................
TF3A_BUFAM_5  132  ......................................................................................................................................................................................qPFKCsh.EGCDKC.YASPSRLKRHEkt...H.......................................................................................................................................................................................................................................................................................................................
TF3A_BUFAM_6  159  ......................................................................................................................................................................................aGYPCrkdSTCPFV.GKTWSDYMKHAael..H.......................................................................................................................................................................................................................................................................................................................
TF3A_BUFAM_7  188  ......................................................................................................................................................................................sEVTC...SICNRT.FKRKSFLKEHKki...Hreer...................................................................................................................................................................................................................................................................................................................
TF3A_BUFAM_8  217  ......................................................................................................................................................................................iVYRCpr.ENCDRT.YTTKFNLKSHIltf..Henl....................................................................................................................................................................................................................................................................................................................
TF3A_BUFAM_9  248  ......................................................................................................................................................................................rPFVCeh.EGCGKT.FAMKQSLDRHFnt...Hdpek.....kkmvkpprpvrslasrlsgykpkkskkkkkpsqtpamesqeqqpdaskadplpvlenltlk.................................................................................................................................................................................................................................................
TF3A_RANPI_1   11  ............................................................................................................................................................................mgekatpavykRYICsf.ADCSAS.YNKNWKLQAHLck...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_RANPI_2   41  ......................................................................................................................................................................................rPFPCtv.EGCGKG.FVTLFHLTRHSmt...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_RANPI_3   71  ......................................................................................................................................................................................kPCKCda.PDCDLS.FTTMTNLRKHYqra..Hlsps...................................................................................................................................................................................................................................................................................................................
TF3A_RANPI_4  103  ......................................................................................................................................................................................lIYECyf.ADCGQT.FKKHNQLKLHQyi...Htnq....................................................................................................................................................................................................................................................................................................................
TF3A_RANPI_5  133  ......................................................................................................................................................................................qPFKCnh.EGCDKS.FSSPSRLKRHEkv...H.......................................................................................................................................................................................................................................................................................................................
TF3A_RANPI_6  160  ......................................................................................................................................................................................aGYPCqkdSSCSFV.GKTWTEYMKHLaas..Hs......................................................................................................................................................................................................................................................................................................................
TF3A_RANPI_7  190  ......................................................................................................................................................................................ePTIC...DVCNRK.FKNKTHLKDHKrt...Hever...................................................................................................................................................................................................................................................................................................................
TF3A_RANPI_8  219  ......................................................................................................................................................................................vVYKCpr.DGCDRT.YTKKFGLQSHIlsf..Heds....................................................................................................................................................................................................................................................................................................................
TF3A_RANPI_9  250  ......................................................................................................................................................................................rPFACgh.PGCGKT.FAMKQSLDRHAnt...Hdpek.....kkmkkprpkkslasrlsgynpkklsktpksaselgklppdgppdtatamqnlsik.......................................................................................................................................................................................................................................................
TF3A_XENBO_1   11  ............................................................................................................................................................................mgekalpvvykRYICsf.ADCGAS.YNKNWKLRAHLck...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_XENBO_2   41  ......................................................................................................................................................................................kPFPCke.EGCDKG.FTSLHHLTRHSit...Htge....................................................................................................................................................................................................................................................................................................................
TF3A_XENBO_3   71  ......................................................................................................................................................................................kNFKCds.DKCDLT.FTTKANMKKHFnrf..Hnlql...................................................................................................................................................................................................................................................................................................................
TF3A_XENBO_4  103  ......................................................................................................................................................................................cVYVChf.EGCDKA.FKKHNQLKVHQft...Htqq....................................................................................................................................................................................................................................................................................................................
TF3A_XENBO_5  133  ......................................................................................................................................................................................lPYKCph.EGCDKS.FSVPSCLKRHEkv...H.......................................................................................................................................................................................................................................................................................................................
TF3A_XENBO_6  160  ......................................................................................................................................................................................aGYPCkkdDSCLFV.GKTWTLYLKHVkec..Hq......................................................................................................................................................................................................................................................................................................................
TF3A_XENBO_7  190  ......................................................................................................................................................................................ePVMC...DECKRT.FKHKDYLRNHKkt...Hkker...................................................................................................................................................................................................................................................................................................................
TF3A_XENBO_8  219  ......................................................................................................................................................................................tVYCCpr.DGCERS.YTTEFNLQSHMqsf..Heeq....................................................................................................................................................................................................................................................................................................................
TF3A_XENBO_9  250  ......................................................................................................................................................................................rPFACeh.AECGKS.FAMKKSLERHSvv...Hdpek.....rklkekcprpkrslasrlsgcappkskeksaakatektgsvvknkpsgtetkgslviek...................................................................................................................................................................................................................................................
TF3A_YEAST_1   47  ........................................................................................................................................mggevlnnegmplaelkqetipisrsesseslnsltstrssssnrpkTYFCdy.DGCDKA.FTRPSILTEHQlsv..Hqgl....................................................................................................................................................................................................................................................................................................................
TF3A_YEAST_2   78  ......................................................................................................................................................................................rAFQC...DKCAKS.FVKKSHLERHLyt...Hsdt....................................................................................................................................................................................................................................................................................................................
TF3A_YEAST_3  106  ......................................................................................................................................................................................kPFQC...SYCGKG.VTTRQQLKRHEvt...Ht......................................................................................................................................................................................................................................................................................................................
TF3A_YEAST_4  132  ......................................................................................................................................................................................kSFICpe.EGCNLR.FYKHPQLRAHIlsv..Hl......................................................................................................................................................................................................................................................................................................................
TF3A_YEAST_5  161  ......................................................................................................................................................................................hKLTC...PHCNKS.FQRPYRLRNHIskh..Hdpeve..................................................................................................................................................................................................................................................................................................................
TF3A_YEAST_6  192  ......................................................................................................................................................................................nPYQCtf.AGCCKE.FRIWSQLQSHIknd..H.......................................................................................................................................................................................................................................................................................................................
TF3A_YEAST_7  220  ......................................................................................................................................................................................pKLKC...PICSKP.CVGENGLQMHMii...Hddslvt.................................................................................................................................................................................................................................................................................................................
TF3A_YEAST_8  251  ......................................................................................................................................................................................kNWKC...HICPDMsFSRKHDLLTHYgsi..Htee......diplelkykisdiqqlvqdhgvqlgnskhsneqdeekisnrlrkrrkltennnveflqnevdlekrlesgenglnlllntvg............................................................................................................................................................................................................................
TF3A_YEAST_9  363  ......................................................................................................................................................................................rKYRCfy.NNCSRT.FKTKEKYEKHIdk...Hkvhe.....lklkilqekeenktlvdqnhkepfiiqketqsagdk..........................................................................................................................................................................................................................................................................
Q9W7D7_1       14  .........................................................................................................................................................................mmkaekavgagpqqVFTCth.AGCGAC.FPREWKLKAHEtv...Htge....................................................................................................................................................................................................................................................................................................................
Q9W7D7_2       44  ......................................................................................................................................................................................rPCACpt.AGCGSL.FKRTSHLKRHVlq...Hkgv....................................................................................................................................................................................................................................................................................................................
Q9W7D7_3       74  ......................................................................................................................................................................................kGFQCkf.ANCAKS.FIDAQRLKKHQnsa..Hgn.....................................................................................................................................................................................................................................................................................................................
Q9W7D7_4      104  ......................................................................................................................................................................................hKFKCnq.PKCSLS.FKKRRLLKLHLke...Hnvh....................................................................................................................................................................................................................................................................................................................
Q9W7D7_5      134  ......................................................................................................................................................................................pNFKCsn.IRCTAT.FDSHIARKAHEkk...H.......................................................................................................................................................................................................................................................................................................................
Q9W7D7_6      161  ......................................................................................................................................................................................aGYSCph.KDCQVV.EHTWSKLQRHLak...Hp......................................................................................................................................................................................................................................................................................................................
Q9W7D7_7      189  ......................................................................................................................................................................................vSFTC...GVCEKV.YDKAGALRRHKri...Hashk...................................................................................................................................................................................................................................................................................................................
Q9W7D7_8      218  ......................................................................................................................................................................................pVLLCpr.ANCQAY.FTTTFNLEHHIrkv..Hlql....................................................................................................................................................................................................................................................................................................................
Q9W7D7_9      249  ......................................................................................................................................................................................lKYKCff.PDCPRT.FVMRESMHRHMvh...Hdpsa.....itvkkpqrpkkswqkrlnghnqpfveenlqrlfalrmrisrrakvetnlaglfnerkiphfvdpevnlrnlfgikppiplespavapvk.....................................................................................................................................................................................................................
Q62065_1       32  .......................................................................................................................................................maeapgspnhqelgllgegeqahvkllvnkegRYVC...MLCHKT.FKTGSILKAHMvt...Hssr....................................................................................................................................................................................................................................................................................................................
Q62065_2       60  ......................................................................................................................................................................................kDHEC...KLCGAS.FRTKGSLIRHHrr...Htde....................................................................................................................................................................................................................................................................................................................
Q62065_3       88  ......................................................................................................................................................................................rPYKC...AKCGKS.FRESGALTRHLksltpCtekirfsiskdtavgkeevpagssastvgtvtssvagdpmetspvihlvtdakgtvihevhvqmqelplgmkaltpespdseelpcssensrenllhqamqnsgivlervageesalepappsgsspqclgdgspelpllkveqietqvaseaatvp..........................................................................................................................................................
Q62065_4      273  ......................................................................................................................................................................................rTHPC...PQCSET.FPTAATLEAHKrg...Hiap....................................................................................................................................................................................................................................................................................................................
Q62065_5      301  ......................................................................................................................................................................................rPFTC...TQCGKA.FPKAYLLKNDQev...Hvhe....................................................................................................................................................................................................................................................................................................................
Q62065_6      329  ......................................................................................................................................................................................rRFRC...GDCGKL.YKTIAHVRGHRrv...Hsde....................................................................................................................................................................................................................................................................................................................
Q62065_7      357  ......................................................................................................................................................................................rPFPC...PQCGKR.YKTKNAQQVHFrt...Hlee....................................................................................................................................................................................................................................................................................................................
Q62065_8      385  ......................................................................................................................................................................................kPHVC...QFCSRG.FREKGSLVRHVrh...Htge....................................................................................................................................................................................................................................................................................................................
Q62065_9      413  ......................................................................................................................................................................................kPFKC...YKCGRG.FADDGTLNRHLrtkggCllev.....eellvseespsaaatvlaedphtvlvqfssvvadtqeyiieataddtetseateiiegtqtevdshimkvvqqivhqagaghqiivqnvtmdqetalgseaaaadtitiatpeslteqvamtlasaisegtvltaragpnsteqatvtmvssedieilehggelviaspegqlevqtviv..........................................................................................................................
O75701_1      183  mgpplaprpahvpgeagprrtresrpgavsfadvavyfspeeweclrpaqralyrdvmretfghlgalgeagpsgrdpqsvgfsvpkpafiswvegeveawspeaqdpdgessaafsrgqgqeagsrdgneekerlkkcpkqkevahevavkewwpsvacpefcnprqspmnpwlkdtltrrlPHSC...PDCGRN.FSYPSLLASHQrv...Hsge....................................................................................................................................................................................................................................................................................................................
O75701_2      211  ......................................................................................................................................................................................rPFSC...GQCQAR.FSQRRYLLQHQfi...Htge....................................................................................................................................................................................................................................................................................................................
O75701_3      239  ......................................................................................................................................................................................kPYPC...PDCGRR.FRQRGSLAIHRra...Htge....................................................................................................................................................................................................................................................................................................................
O75701_4      267  ......................................................................................................................................................................................kPYAC...SDCKSR.FTYPYLLAIHQrk...Htge....................................................................................................................................................................................................................................................................................................................
O75701_5      295  ......................................................................................................................................................................................kPYSC...PDCSLR.FAYTSLLAIHRri...Htge....................................................................................................................................................................................................................................................................................................................
O75701_6      323  ......................................................................................................................................................................................kPYPC...PDCGRR.FTYSSLLLSHRri...Hsds....................................................................................................................................................................................................................................................................................................................
O75701_7      351  ......................................................................................................................................................................................rPFPC...VECGKG.FKRKTALEAHRwi...Hrscserrawqqavvgrsepipvlggkdppvhfrhfpdifqefcqqrlqdrgvpsnappvpgqsprsffrdrrqssavaycgyrgvseasgpyiflegkkpllyfpdtpppplekaaeaalfkgkwddearemapppapllaprpgetrpgcrkpgtvsfadvavyfspeewgclrpaqralyrdvmqetyghlgalgfpgpkpaliswmeqeseawspaaqdpekgerlggarrgdvpnrkeeepeevprakgprkapvkespevlvernpdpaisvaparaqppknaawdpttgaqppapipsmdaqagq
O75701_8      687  ......................................................................................................................................................................................rRHVC...TDCGRR.FTYPSLLVSHRrm...Hsge....................................................................................................................................................................................................................................................................................................................
O75701_9      715  ......................................................................................................................................................................................rPFPC...PECGMR.FKRKFAVEAHQwi...Hrscs.....ggrrgrrpgiravprapvrgdrdppvlfrhypdifeecg.......................................................................................................................................................................................................................................................................
ZF92_MOUSE_1  139  ............................................maatllrakpkvtvsfedvsvyftktewrlldlkqrtlykqvmlenyshlvsvgfafskpnlvsqlergekpwirddgmesaarscagnriktktltskpklfgrgllrntsrsslqrrphdfrpnpivryqhsriadkRYLC...QQCGKS.FSRSFNLIKHRii...Hsre....................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_2  167  ......................................................................................................................................................................................kPYEC...SECGKQ.FQRSLALLEHQri...Hsgd....................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_3  195  ......................................................................................................................................................................................kPYEC...GECGKT.FTRSSNLVKHQvi...Hsse....................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_4  223  ......................................................................................................................................................................................mPFVC...RMCGKV.FRRSFALLEHTri...Hsge....................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_5  251  ......................................................................................................................................................................................rPFEC...TECGKA.FSRSSNLIEHQri...Hsgq....................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_6  279  ......................................................................................................................................................................................kPYIC...KECGKA.FKGVSQVIHHQli...Hrgd....................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_7  307  ......................................................................................................................................................................................kPFTC...HEYGKA.FRGLSGLSQHQrv...Hrge....................................................................................................................................................................................................................................................................................................................
ZF92_MOUSE_8  335  ......................................................................................................................................................................................kPYEC...SECGRA.FGRRANLFKHQvv...Hggvrlqhrtrgkgfqrkllehlrdlhgqqpqeagegssaepqpidtne.......................................................................................................................................................................................................................................................................
ZF92_MOUSE_9  408  ......................................................................................................................................................................................kPQVC...ERCGQV.FENKLLLCRHLri...Hdded.....dkkqkpvisstsvledksllsqhleaqpteesdsegsvvfvyaekphgpssp..........................................................................................................................................................................................................................................................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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