kringle_2_ref6 - reference 6

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Multiple alignment of repeats only
Name                KRINGLE
Number of sequences 7


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


                                                                                                                                                 **************************************************************************************                                                                                                                                                                                                                                                                                                             
Q28398_01       1  ............................................................................................................................................AVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACessspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_02      80  ..............................................................................................................................QCLEGTGENYRGSVAVTVSEHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpg...............................................................................................................................................................................................................................................................................................
Q28398_03     173  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACeslspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_04     266  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpd...............................................................................................................................................................................................................................................................................................
Q28398_05     359  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACeslspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_06     452  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpg...............................................................................................................................................................................................................................................................................................
Q28398_07     545  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACessspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_08     638  ..............................................................................................................................QCLEGTGENYRGSVAVTVSEHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpg...............................................................................................................................................................................................................................................................................................
Q28398_09     731  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACeslspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_10     824  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpd...............................................................................................................................................................................................................................................................................................
Q28398_11     917  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACeslspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_12    1010  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpg...............................................................................................................................................................................................................................................................................................
Q28398_13    1103  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACeslspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_14    1196  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQPWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpd...............................................................................................................................................................................................................................................................................................
Q28398_15    1289  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACeslspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_16    1382  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpg...............................................................................................................................................................................................................................................................................................
Q28398_17    1475  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACessspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_18    1568  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpg...............................................................................................................................................................................................................................................................................................
Q28398_19    1661  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACessspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_20    1754  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesptppteqqvvpg...............................................................................................................................................................................................................................................................................................
Q28398_21    1847  ..............................................................................................................................QCLEGTGENYRGSVAVTASGHTCQQWRAQSPHNH.SRTPENYP..TKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACessspptepmvvpg...............................................................................................................................................................................................................................................................................................
Q28398_22    1940  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGYTCQRWREQSPHSH.SWTPENYP..TKNL.DGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACesps.sserldppd...............................................................................................................................................................................................................................................................................................
Q28398_23    2032  ..............................................................................................................................QCLEENGANYRGNMAVTASGHICQHWRRQRPHKH.EYTTENYP..SKNL.VGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPACespaasaepfvvpd...............................................................................................................................................................................................................................................................................................
Q28398_24    2125  ..............................................................................................................................QCLEGNGEDYRGNMSVTASGHTCQRWKEQTPHKH.KYTPESYP..SKNL.AGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACessaastehlvapd...............................................................................................................................................................................................................................................................................................
Q28398_25    2218  ..............................................................................................................................QCLEGNGENYRGNMSVTISGYTCQNWRMQTPHGH.EYTPENYP..SKNL.VGNYCRNTGGE.VAPWCYTTN.SAVRWEYCS.IPACessaastehlvvad...............................................................................................................................................................................................................................................................................................
Q28398_26    2311  ..............................................................................................................................QCLEGNGENYRGSMAVTASGHRCQRWREQRPHKH.SRTPENYP..SKNL.IGNLCRNPDGE.VAPWCYTTN.SAVRWEYCS.IPACesstpptepldlvd...............................................................................................................................................................................................................................................................................................
Q28398_27    2404  ..............................................................................................................................QCLEGTGENYRGNMAVTASGHTCQRWREQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.VAPWCYTTN.SAVRWEYCS.IPACesstpptepldlvd...............................................................................................................................................................................................................................................................................................
Q28398_28    2497  ..............................................................................................................................QCLEGTGENYRGNMAVTASGHTCQRWREQSPHSH.SRTPENYP..TKNL.VGNYCRNPDGE.VAPWCYTTN.SAMRWEYCS.IPACesptpptehlvvpe...............................................................................................................................................................................................................................................................................................
Q28398_29    2590  ..............................................................................................................................QCLEGNGENYQGNMAITVSGQPCQGWRKQTPHRH.EYTPENYP..SKNL.FGNYCRNPDGE.IAPWCYTTN.SAVRWEYCS.IPTCessspptepmiipd...............................................................................................................................................................................................................................................................................................
Q28398_30    2683  ..............................................................................................................................QCLEGTGENYRGSVAVTVSGHTCQRWREQSPHSH.SRTPENYP..TKNL.FGNYCRNPDGE.VAPWCYTTN.SAVRWEYCK.IPSCnssssptepstsqd...............................................................................................................................................................................................................................................................................................
Q28398_31    2776  ..............................................................................................................................QCLKGNGESYQGNISVTVSGYTCQRWREQTPHRH.ARTPDNYP..CKNL.VGNYCRNPDGE.VAPWCYTTN.SAVRWEYCS.IPTCesptpptepldspat..............................................................................................................................................................................................................................................................................................
PLMN_PIG_1     83  ............................................dslddyvntqgaflfslsrkqvaarsveecaakceaetnficrafqyhskdqqcvvmaensktspiarmrdvvlfekriylsECKTGNGKNYRGTTSKTKSGVICQKWSVSSPHIP.KYSPEKFP..LAGL.EENYCRNPDNDEKGPWCYTTD.PETRFDYCD.IPEC..............ed.............................................................................................................................................................................................................................................................................................
PLMN_PIG_2    165  ..............................................................................................................................ECMHCSGEHYEGKISKTMSGIECQSWGSQSPHAH.GYLPSKFP..NKNL.KMNYCRNPDGE.PRPWCFTTD.PNKRWEFCD.IPRC..............ttppptsgpty....................................................................................................................................................................................................................................................................................
PLMN_PIG_3    255  ..............................................................................................................................QCLKGRGENYRGTVSVTASGHTCQRWSAQSPHKH.NRTPENFP..CKNL.EENYCRNPDGE.TAPWCYTTD.SEVRWDYCK.IPSC..............gssttstehldapvppeqtpvaq........................................................................................................................................................................................................................................................................
PLMN_PIG_4    357  ..............................................................................................................................DCYRGNGESYRGTSSTTITGRKCQSWVSMTPHRH.EKTPGNFP..NAGL.TMNYCRNPDAD.KSPWCYTTD.PRVRWEYCN.LKKC..............seteqqvtnfpaiaqvpsvedlse.......................................................................................................................................................................................................................................................................
PLMN_PIG_5    460  ..............................................................................................................................DCMFGNGKRYRGKRATTVAGVPCQEWAAQEPHRHSIFTPETNP..RAGL.EKNYCRNPDGDDNGPWCYTTN.PQKLFDYCD.VPQC..............vtssfdcgkpkvepkkcpa...............rvvggcvsiphswpwqislryryrghfcggtlispewvltakhclekssspssykvilgaheeyhlgegvqeidvsklfkepseadiallklsspavitdkvipaclptpnyvvadrtacyitgwgetkgtygagllkearlpvienkvcnryeylggkvspnelcaghlaggidscqgdsggplvcfekdkyilqgvtswglgcalpnkpgvyvrvsrfvtwieeimrrn......................
HGFL_HUMAN_1  109  ..................mgwlpllllltqylgvpgqrsplndfqvlrgtelqhllhavvpgpwqedvadaeecagrcgplmdcrafhynvsshgcqllpwtqhsphtrlrrsgrcdlfqkkdyvrTCIMNNGVGYRGTMATTVGGLPCQAWSHKFPNDH.KYTPTLRN....GL.EENFCRNPDGDPGGPWCYTTD.PAVRFQSCG.IKSC..............rea............................................................................................................................................................................................................................................................................................
HGFL_HUMAN_2  190  ..............................................................................................................................ACVWCNGEEYRGAVDRTESGRECQRWDLQHPHQH.PFEPGKFL..DQGL.DDNYCRNPDGS.ERPWCYTTD.PQIEREFCD.LPRC..............gseaqprqeattv..................................................................................................................................................................................................................................................................................
HGFL_HUMAN_3  282  ..............................................................................................................................SCFRGKGEGYRGTANTTTAGVPCQRWDAQIPHQH.RFTPEKYA..CKDL.RENFCRNPDGS.EAPWCFTLR.PGMRAAFCYQIRRC..............tddvrpq........................................................................................................................................................................................................................................................................................
HGFL_HUMAN_4  369  ..............................................................................................................................DCYHGAGEQYRGTVSKTRKGVQCQRWSAETPHKP.QFTFTSEP..HAQL.EENFCRNPDGDSHGPWCYTMD.PRTPFDYCA.LRRC..............addqppsildppdqvqfekcgkrvdrldqrrsklrvvgghpgnspwtvslrnrqgqhfcggslvkeqwiltarqcfsschmpltgyevwlgtlfqnpqhgepslqrvpvakmvcgpsgsqlvllklersvtlnqrvaliclppewyvvppgtkceiagwgetkgtgndtvlnvallnvisnqecnikhrgrvresemctegllapvgacegdyggplacfthncwvlegiiipnrvcarsrwpavftrvsvfvdwihkvmrlg........................
HGFL_MOUSE_1  109  ..................mgwlplllllvqcsralgprsplndfqlfrgtelrnllhtavpgpwqedvadaeecarrcgplldcrafhynmsshgcqllpwtqhslhtqlyhsslchlfqkkdyvrTCIMDNGVSYRGTVARTAGGLPCQAWSRRFPNDH.KYTPTPKN....GL.EENFCRNPDGDPRGPWCYTTN.RSVRFQSCG.IKTC..............rea............................................................................................................................................................................................................................................................................................
HGFL_MOUSE_2  190  ..............................................................................................................................VCVLCNGEDYRGEVDVTESGRECQRWDLQHPHSH.PFQPEKFL..DKDL.KDNYCRNPDGS.ERPWCYTTD.PNVEREFCD.LPSC..............gpnlpptvkgsksqrrnkgkal.........................................................................................................................................................................................................................................................................
HGFL_MOUSE_3  291  ..............................................................................................................................NCFRGKGEDYRGTTNTTSAGVPCQRWDAQSPHQH.RFVPEKYA..CKDL.RENFCRNPDGS.EAPWCFTSR.PGLRMAFCHQIPRC..............teelvpe........................................................................................................................................................................................................................................................................................
HGFL_MOUSE_4  378  ..............................................................................................................................GCYHGSGEQYRGSVSKTRKGVQCQHWSSETPHKP.QFTPTSAP..QAGL.EANFCRNPDGDSHGPWCYTLD.PDILFDYCA.LQRC..............dddqppsildppdqvvfekcgkrvdksnkl....rvvgghpgnspwtvslrnrqgqhfcggslvkeqwvltarqciwschepltgyevwlgtinqnpqpgeanlqrvpvakavcgpagsqlvllklerpvilnhhvaliclppeqyvvppgtkceiagwgesigtsnntvlhvasmnvisnqecntkyrghiq...eseictqglvvpvgacegdyggplacythdcwvlqgliipnrvcarprwpaiftrvsvfvdwinkvmqle.....................
Q90865_1      107  ....................mparlglllslavalsaghrsplndfqrlrgtelraapnepppsapahgaaqqcaqrcanrpdcrafhherqsqlcqllpwsqrspgarlqknihydlyqkkdflrECIVANGTSYRGTRDTTERGLRCQHWQATTPHDH.RFLPSLRN....GL.EENYCRNPDRDKRGPWCYTVD.PNVRHQSCG.IKKC..............eda............................................................................................................................................................................................................................................................................................
Q90865_2      188  ..............................................................................................................................VCMTCNGEDYRGFVDHTESGTECQRWDLQHPHKH.PYHPDKYP..EKGL.DDNYCRNPDSS.EQPWCYTTD.PALEREFCR.IRVC..............kkrprpinvtt....................................................................................................................................................................................................................................................................................
Q90865_3      278  ..............................................................................................................................GCYRGKGEGYRGRVNVTVSGIPCQRWDAQTLHRH.HFVPSKYP..CKDL.QENYCRNPDGS.EAPWCFTTR.PGMRVAFCFHIRRC..............ddeldae........................................................................................................................................................................................................................................................................................
Q90865_4      365  ..............................................................................................................................ECYHGHGERYHGHVSKTRKGITCQRWDATTPHVP.QISPTTHP..EAHL.EKNYCRNPDNDSHGPWCYTMD.PRTPFDYCA.IKPC..............sgsavpsvlenadavtfeecgrrderlqqkq...rvvggmpgnspwtvsirnraglhfcggslvkeqwvistqqcfsscdadlsgyevhlgtlfkdpsptdpdlqaipivriicgpseshlvllklawpavlnkrvaliclpperyivpagttceiagfgetrgtadghvlnvaklpvmahaecqaalrgrlkeselctaplragvgacegdyggalacltadcwvlegvitpsrvcartdqpalfirvslyvdwihkvmrmv........................
UROT_HUMAN_1  126  .mdamkrglccvlllcgavfvspsqeiharfrrgarsyqvicrdektqmiyqqhqswlrpvlrsnrveycwcnsgraqchsvpvkscseprcfnggtcqqalyfsdfvcqcpegfagkcceidtraTCYEDQGISYRGTWSTAESGAECTNWNSSALAQK.PYSGRRPDAIRLGLGNHNYCRNPDRD.SKPWCYVFKAGKYSSEFCS.TPAC..............segns..........................................................................................................................................................................................................................................................................................
UROT_HUMAN_2  214  ..............................................................................................................................DCYFGNGSAYRGTHSLTESGASCLPWNSMILIGK.VYTAQNPSAQALGLGKHNYCRNPDGD.AKPWCHVLKNRRLTWEYCD.VPSC..............stcglrqysqpqf.....................rikgglfadiashpwqaaifakhrrspgerflcggilisscwilsaahcfqerfpphhltvilgrtyrvvpgeeeqkfevekyivhkefdddtydndiallqlksdssrcaqessvvrtvclppadlqlpdwtecelsgygkhealspfyserlkeahvrlypssrctsqhllnrtvtdnmlcagdtrsggpqanlhdacqgdsggplvclndgrmtlvgiiswglgcgqkdvpgvytkvtnyldwirdnmrp
URT1_DESRO    127  mvntmktkllcvlllcgavfslprqetyrqlargsraygvackdeitqmtyrrqeswlrpevrskrvehcqcdrgqarchtvpvnscseprcfnggtcwqavyfsdfvcqcpagytgkrcevdtraTCYEGQGVTYRGTWSTAESRVECINWNSSLLTRR.TYNGRMPDAFNLGLGNHNYCRNPNGA.PKPWCYVIKAGKFTSESCS.VPVC..............skatcglrkykepql...................hstgglftditshpwqaaifaqnrrssgerflcggilisscwvltaahcfqesylpdqlkvvlgrtyrvkpgeeeqtfkvkkyivhkefdddtynndiallqlksdspqcaqesdsvraiclpeanlqlpdwtecelsgygkhkssspfyseqlkeghvrlypssrcapkflfnktvtnnmlcagdtrsgeiypnvhdacqgdsggplvcmndnhmtllgiiswgvgcgekdvpgvytkvtnylgwirdnmhl

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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