lrr_2_ref6 - reference 6


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Multiple alignment of complete sequences


Multiple alignment of repeats only

Number of sequences              8





Key:


ALRR repeat - type A


BLRR repeat - type B


CLRR repeat - type C


DLRR repeat - type D


ELRR repeat - type E


FLRR repeat - type F


GLRR repeat - type G


HLRR repeat - type H


ILRR repeat - type I


JLRR repeat - type J


KLRR repeat - type K


LLRR repeat - type L


MLRR repeat - type M


NLRR repeat - type N


ULRR repeat - type unknown










Sequence Name
   # Repeats

 
82   
 
  105

 
106  
 
  129

 
130  
 
  151

 
151  
 
  174

 
175  
 
  200

 
201  
 
  222

 
222  
 
  245

 
246  
 
  269

 
270  
 
  292

 
293  
 
  316




PGS2_HUMAN
     10   


A

A

A

A

A

A

A

J

A

K





 
54   
 
   77

 
78   
 
  101

 
102  
 
  125

 
126  
 
  149

 
150  
 
  173

 
174  
 
  197

 
198  
 
  221

 
222  
 
  245

 
247  
 
  270

 
271  
 
  293




CHAD_BOVIN
     10   


U

A

A

A

A

A

A

E

A

A





 
80   
 
  103

 
103  
 
  126

 
128  
 
  151

 
152  
 
  175

 
177  
 
  200

 
201  
 
  224

 
226  
 
  249

 
250  
 
  278

 
279  
 
  302

 
303  
 
  326

 
326  
 
  349

 
351  
 
  374

 
375  
 
  399

 
402  
 
  425

 
428  
 
  451

 
453  
 
  476

 
477  
 
  500

 
502  
 
  526

 
527  
 
  550

 
551  
 
  574

 
577  
 
  600

 
601  
 
  624

 
625  
 
  648

 
649  
 
  672

 
673  
 
  700

 
708  
 
  731

 
733  
 
  756

 
757  
 
  780

 
781  
 
  804

 
805  
 
  828

 
828  
 
  851

 
854  
 
  877

 
879  
 
  902

 
903  
 
  926

 
928  
 
  949

 
949  
 
  972

 
973  
 
  996

 
996  
 
 1019

 
1021 
 
 1044

 
1045 
 
 1070

 
1071 
 
 1094




CHAO_DROME
     41   


U

U

U

A

U

U

A

U

U

U

U

A

U

U

U

U

A

U

A

A

A

A

A

U

U

U

U

U

U

L

U

U

U

U

U

U

U

U

U

U

U





 
51   
 
   74

 
75   
 
   98

 
99   
 
  122

 
123  
 
  146

 
147  
 
  170

 
171  
 
  194

 
195  
 
  218

 
219  
 
  242

 
243  
 
  266

 
267  
 
  290

 
291  
 
  314

 
315  
 
  339

 
340  
 
  363

 
364  
 
  387

 
388  
 
  411




GPV_MOUSE
     15   


U

U

A

U

A

A

U

U

A

U

A

A

U

L

C





 
34   
 
   57

 
58   
 
   81

 
82   
 
  105

 
106  
 
  129

 
130  
 
  153

 
154  
 
  177

 
178  
 
  201

 
202  
 
  225

 
226  
 
  249

 
250  
 
  273




A2GL_HUMAN
     10   


U

U

A

U

U

U

A

A

A

U





 
24   
 
   48

 
52   
 
   76

 
81   
 
  105

 
109  
 
  133

 
138  
 
  162

 
166  
 
  190

 
195  
 
  219

 
223  
 
  247

 
252  
 
  276

 
280  
 
  304

 
309  
 
  333

 
337  
 
  361

 
366  
 
  390

 
394  
 
  418

 
423  
 
  446




rini_pig
     15   


M

E

M

E

M

E

M

E

M

E

M

E

M

E

N





 
4    
 
   28

 
32   
 
   56

 
60   
 
   90

 
94   
 
  118

 
122  
 
  146

 
159  
 
  183

 
187  
 
  212

 
216  
 
  240

 
244  
 
  268

 
274  
 
  298

 
303  
 
  329

 
333  
 
  344




1YRGB
     12   


U

E

U

U

A

U

U

U

U

U

U

U





 
42   
 
   61

 
64   
 
   83

 
86   
 
  105

 
108  
 
  127

 
130  
 
  149

 
152  
 
  171

 
174  
 
  193

 
196  
 
  208




1D0BA
      8   


U

A

A

A

A

A

A

U










Key:


ALRR repeat - type A


BLRR repeat - type B


CLRR repeat - type C


DLRR repeat - type D


ELRR repeat - type E


FLRR repeat - type F


GLRR repeat - type G


HLRR repeat - type H


ILRR repeat - type I


JLRR repeat - type J


KLRR repeat - type K


LLRR repeat - type L


MLRR repeat - type M


NLRR repeat - type N


ULRR repeat - type unknown







Multiple alignment of complete sequences
Multiple alignment of repeats only



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