sushi_2_ref6 - reference 1

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Multiple alignment of complete sequences
Name                SUSHI
Number of sequences 6


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


                    ************************************************************************************
CR1_HUMAN_1     42  QCNAp.EWLPFArptnltd.....EFEFPI..GTYLNYECRP......GYSGRP....FSIICLKn....SVWTGa.KDRCRRk   102  
CR1_HUMAN_2    103  SCRNp.PDPVNGmvhv........IKGIQF..GSQIKYSCTK......GYRLIG...sSSATCIIsg.dtVIWDNe.TPICDRi   164  
CR1_HUMAN_3    165  PCGLp.PTITNGdfistn......RENFHY..GSVVTYRCNPgsggrkVFELVG...ePSIYCTSnddqvGIWSGp.APQCIIp   235  
CR1_HUMAN_4    237  KCTP..PNVENGilvsdn......RSLFSL..NEVVEFRCQP......GFVMKG...pRRVKCQAl....NKWEPe.LPSCSR.   296  
CR1_HUMAN_5    296  VCQPp.PDVLHAertqrd......KDNFSP..GQEVFYSCEP......GYDLRG...aASMRCTPq....GDWSPa.APTCEVk   356  
CR1_HUMAN_6    357  SCDDfmGQLLNGrvlf........PVNLQL..GAKVDFVCDE......GFQLKG...sSASYCVLag.meSLWNSs.VPVCEQi   419  
CR1_HUMAN_7    420  FCPSp.PVIPNGrhtgkp......LEVFPF..GKAVNYTCDPhpdrgtSFDLIG...eSTIRCTSdpqgnGVWSSp.APRCGIl   490  
CR1_HUMAN_8    492  HCQAp.DHFLFAklktqtn.....ASDFPI..GTSLKYECRP......EYYGRP....FSITCLDn....LVWSSp.KDVCKRk   552  
CR1_HUMAN_9    553  SCKTp.PDPVNGmvhv........ITDIQV..GSRINYSCTT......GHRLIG...hSSAECILsg.naAHWSTk.PPICQRi   614  
CR1_HUMAN_10   615  PCGLp.PTIANGdfistn......RENFHY..GSVVTYRCNPgsggrkVFELVG...ePSIYCTSnddqvGIWSGp.APQCIIp   685  
CR1_HUMAN_11   687  KCTP..PNVENGilvsdn......RSLFSL..NEVVEFRCQP......GFVMKG...pRRVKCQAl....NKWEPe.LPSCSR.   746  
CR1_HUMAN_12   746  VCQPp.PDVLHAertqrd......KDNFSP..GQEVFYSCEP......GYDLRG...aASMRCTPq....GDWSPa.APTCEVk   806  
CR1_HUMAN_13   807  SCDDfmGQLLNGrvlf........PVNLQL..GAKVDFVCDE......GFQLKG...sSASYCVLag.meSLWNSs.VPVCEQi   869  
CR1_HUMAN_14   870  FCPSp.PVIPNGrhtgkp......LEVFPF..GKAVNYTCDPhpdrgtSFDLIG...eSTIRCTSdpqgnGVWSSp.APRCGIl   940  
CR1_HUMAN_15   942  HCQAp.DHFLFAklktqtn.....ASDFPI..GTSLKYECRP......EYYGRP....FSITCLDn....LVWSSp.KDVCKRk  1002  
CR1_HUMAN_16  1003  SCKTp.PDPVNGmvhv........ITDIQV..GSRINYSCTT......GHRLIG...hSSAECILsg.ntAHWSTk.PPICQRi  1064  
CR1_HUMAN_17  1065  PCGLp.PTIANGdfistn......RENFHY..GSVVTYRCNLgsrgrkVFELVG...ePSIYCTSnddqvGIWSGp.APQCIIp  1135  
CR1_HUMAN_18  1137  KCTP..PNVENGilvsdn......RSLFSL..NEVVEFRCQP......GFVMKG...pRRVKCQAl....NKWEPe.LPSCSR.  1196  
CR1_HUMAN_19  1196  VCQPp.PEILHGehtpsh......QDNFSP..GQEVFYSCEP......GYDLRG...aASLHCTPq....GDWSPe.APRCAVk  1256  
CR1_HUMAN_20  1257  SCDDflGQLPHGrvlf........PLNLQL..GAKVSFVCDE......GFRLKG...sSVSHCVLvg.mrSLWNNs.VPVCEHi  1319  
CR1_HUMAN_21  1320  FCPNp.PAILNGrhtgtp......SGDIPY..GKEISYTCDPhpdrgmTFNLIG...eSTIRCTSdphgnGVWSSp.APRCELs  1390  
CR1_HUMAN_22  1395  HCKTp.EQFPFAsptipin.....DFEFPV..GTSLNYECRP......GYFGKM....FSISCLEn....LVWSSv.EDNCRRk  1455  
CR1_HUMAN_23  1456  SCGPp.PEPFNGmvhi........NTDTQF..GSTVNYSCNE......GFRLIG...sPSTTCLVsg.nnVTWDKk.APICEIi  1517  
CR1_HUMAN_24  1518  SCEPp.PTISNGdfysnn......RTSFHN..GTVVTYQCHTgpdgeqLFELVG...eRSIYCTSkddqvGVWSSp.PPRCISt  1588  
CR1_HUMAN_25  1590  KCTA..PEVENAirvpgn......RSFFSL..TEIIRFRCQP......GFVMVG...sHTVQCQTn....GRWGPk.LPHCSR.  1649  
CR1_HUMAN_26  1649  VCQPp.PEILHGehtlsh......QDNFSP..GQEVFYSCEP......SYDLRG...aASLHCTPq....GDWSPe.APRCTVk  1709  
CR1_HUMAN_27  1710  SCDDflGQLPHGrvll........PLNLQL..GAKVSFVCDE......GFRLKG...rSASHCVLag.mkALWNSs.VPVCEQi  1772  
CR1_HUMAN_28  1773  FCPNp.PAILNGrhtgtp......FGDIPY..GKEISYACDThpdrgmTFNLIG...eSSIRCTSdpqgnGVWSSp.APRCELs  1843  
CR1_HUMAN_29  1847  ACPHp.PKIQNGhyiggh......VSLYLP..GMTISYTCDP......GYLLVG...kGFIFCTDq....GIWSQl.DHYCKEv  1907  
CR1_HUMAN_30  1908  NCSF..PLFMNGiskelem.....KKVYHY..GDYVTLKCED......GYTLEG...sPWSQCQAd....DRWDPp.LAKCTSr  1968  
Q61408_1        27  SCEF..PQFKYGrlyfeeil....RPNFPVsiGNKYSYKCDN......GFSPPSglfwDYLRCTV.....QGWKP..EVPCVR.    91  
Q61408_2        91  KCVF..HYVENGefayw.......EKIYVQ..GQSLKVQCYN......GYSLQN..gqDTMTCTE.....NGWSP..PPKCIRi   148  
Q61408_3       150  TCSVsdIEIENGffses.......FRTYAL..NRETSYRCKQ......GYVTNTgetsRSITCLQ.....NGWSP..QPSCIK.   211  
Q61408_4       211  SCER..PVFENSvtknn.......STWFKL..NDKLDYECLI..ghenEYKHTK....GSITCTY.....YGWSD..TPSCYEi   270  
Q61408_5       271  ECSV..PILDRKlvvspr......KEKYRV..GDLLEFSCRS......GHRVGP....DSVQCYH.....FGWSPs.FPTYKGq   328  
Q61408_6       331  SCAQp.PEIPNGeingak......RVEYSH..GEVVGYDCKP......RFLLKG...pNKIQCVD.....GMWTT..LPVCVEe   389  
Q61408_7       392  TCGDi.PELEHGsvkfs.......VPPYHH..GDSVEFTCAE......TFTMIG...lGSVSCLS.....GKWTQ..LPKCVAt   449  
Q61408_8       454  KCRVl.KSTDIEaikpk.......RNEFQH..NSTMYYKCRD......KQEYEH......SICIN.....GKWNP..EPNCTRk   508  
Q61408_9       510  SCPPp.PQIPNTlviet.......TVKYLD..GEKLSVLCQD......NYLTQD...pEEMMCKD.....GRWQS..LPHCIGl   567  
Q61408_10      568  PCGPp.PSILRGtvsle.......LESYQH..GEEVTYHCST......GFGIDG...pAFIKCEG.....GKWSD..PPKCIKt   625  
Q61408_11      626  NCDVl.PTIENAiirgkk......KKSYRT..GEQVTFRCQS......PYQMNG...sDTVTCVN.....SRWIG..KPVCKDs   684  
Q61408_12      687  KCGPp.PPIDNGditsls......LPEYEP..FSSVDYQCQK......YYLLKG...kKTITCRN.....GKWSE..PPTCLH.   745  
Q61408_13      745  ACIIpeNIMEARkiilkwrht...ENIYSHs.GEDIEFECKY......GYHKARgsppFRTKCIS.....GTIN...YPTCE..   809  
CR2_HUMAN_1     22  SCGSp.PPILNGrisyy.......STPIAV..GTVIRYSCSG......TFRLIG...eKSLLCITkdkvdGTWDKp.APKCEYf    85  
CR2_HUMAN_2     90  SCPE..PIVPGGykirg.......STPYRH..GDSVTFACKT......NFSMNG...nKSVWCQAn....NMWGPtrLPTCVSv   149  
CR2_HUMAN_3    153  ECPAl.PMIHNGhhtsen......VGSIAP..GLSVTYSCES......GYLLVG...eKIINCLSs....GKWSAv.PPTCEEa   213  
CR2_HUMAN_4    214  RCKSl.GRFPNGkvke........PPILRV..GVTANFFCDE......GYRLQG...pPSSRCVIag.qgVAWTK..MPVCEEi   274  
CR2_HUMAN_5    275  FCPSp.PPILNGrhigns......LANVSY..GSIVTYTCDPdpeegvNFILIG...eSTLRCTVdsqktGTWSGp.APRCELs   345  
CR2_HUMAN_6    350  QCPH..PQILRGrmvsgq......KDRYTY..NDTVIFACMF......GFTLKG...sKQIRCNAq....GTWEPs.APVCEK.   409  
CR2_HUMAN_7    409  ECQAp.PNILNGqkedrh......MVRFDP..GTSIKYSCNP......GYVLVG...eESIQCTSe....GVWTPp.VPQCKVa   469  
CR2_HUMAN_8    470  ACEAt.GRQLLTk...........PQHQFV..RPDVNSSCGE......GYKLSG...sVYQECQGt....IPWFMe.IRLCKEi   525  
CR2_HUMAN_9    526  TCPPp.PVIYNGahtgss......LEDFPY..GTTVTYTCNPgpergvEFSLIG...eSTIRCTSndqerGTWSGp.APLCKLs   596  
CR2_HUMAN_10   601  QCSH..VHIANGykisgk......EAPYFY..NDTVTFKCYS......GFTLKG...sSQIRCKAd....NTWDPe.IPVCEKe   660  
CR2_HUMAN_11   661  TCQH..VRQSLQe...........LPAGSR..VELVNTSCQD......GYQLTG...hAYQMCQDae..nGIWFKk.IPLCKVi   717  
CR2_HUMAN_12   718  HCHPp.PVIVNGkhtgmm......AENFLY..GNEVSYECDQ......GFYLLG...eKKLQCRSdskghGSWSGp.SPQCLRs   782  
CR2_HUMAN_13   787  RCPN..PEVKHGyklnkt......HSAYSH..NDIVYVDCNP......GFIMNG...sRVIRCHTd....NTWVPg.VPTCIKk   846  
CR2_HUMAN_14   850  GCPPp.PKTPNGnhtggn......IARFSP..GMSILYSCDQ......GYLLVG...eALLLCTHe....GTWSQp.APHCKEv   910  
CR2_HUMAN_15   911  NCSS..PADMDGiqkglep.....RKMYQY..GAVVTLECED......GYMLEG...sPQSQCQSd....HQWNPp.LAVCRSr   971  
Q99254_1        21  QCKLl.PKYSFAkpsivsd.....KSEFAI..GTTWEYKCRP......GYFRKS....FIITCLEt....SKWSDa.QQFCKRk    81  
Q99254_2        82  PCMNp.QEPLHGsvhi........NTGIEF..GSTITYSCNQ......GYRLIG...dSSATCIVsd.ntVMWDNd.MPLCESi   143  
Q99254_3       144  PCESp.PAISNGdfysss......RDSFFY..GMVVTYYCHTgknrekLFDLVG...eKSIYCTSkdnqvGIWNSp.PPQCIPr   214  
Q99254_4       216  KCPM..PEIENGlvesgf......KHSFFL..NDTVIFKCKS......GFTMKG...sRIAWCQPn....SKWSPp.LPTCFM.   275  
Q99254_5       275  GCLPp.QNILHGdynkk.......DEFFSV..GQKVSYTCNP......GYTLIG...tNLVECTSl....GTWSNt.VPTCEVk   334  
Q99254_6       335  SCDAipNHLLHGrvfl........PPNLQL..GAEVSFVCDL......GFQLKG...kPSSQCIPeg.etVIWNNk.FPVCEQi   397  
Q99254_7       398  SCDPp.PEVKNArkpyy.......SLPIVP..GTVLRYTCSP......SYRLIG...eKAIFCISenqvhATWDKa.PPICESv   461  
Q99254_8       466  SCSD..PIVPGGfmnkgs......KAPFRH..GDSVTFTCKA......NFTMKG...sKTVWCQAn....EMWGPtaLPVCESd   526  
Q99254_9       530  ECPSl.PTIHNGhhtgqh......VDQFVA..GLSVTYSCEP......GYLLTG...kKTIKCLSs....GDWDGv.IPTCKEa   590  
Q99254_10      591  QCEHp.GKFPNGqvke........PLSLQV..GTTVYFSCNE......GYQLQG...qPSSQCVIve.qkAIWTK..KPVCKEi   651  
Q99254_11      652  LCPPp.PPVRNGshtgsf......SENVPY..GSTVT...............................................   680  
F13B_HUMAN_1    24  PCGF..PHVENGriaqyyytfksfYFPMSI..DKKLSFFCLA......GYTTESgrqeEQTTCTT.....EGWSP..EPRCFK.    90  
F13B_HUMAN_2    90  KCTK..PDLSNGyisdv.......KLLYKI..QENMHYGCAS......GYKTTGgkdeEVVQCLS.....DGWSS..QPTCRKe   149  
F13B_HUMAN_3   152  TCLA..PELYNGnystt.......QKTFKV..KDKVQYECAT......GYYTAGgkktEEVECLT.....YGWSL..TPKCTKl   211  
F13B_HUMAN_4   212  KCSSl.RLIENGyfhpv.......KQTYEE..GDVVQFFCHE......NYYLSG...sDLIQCYN.....FGWYPe.SPVCEGr   270  
F13B_HUMAN_5   273  RCPPp.PLPINSkiqth.......STTYRH..GEIVHIECEL......NFEIHG...sAEIRCED.....GKWTE..PPKCIEg   330  
F13B_HUMAN_6   335  ACEEp.PFIENGaanlh.......SKIYYN..GDKVTYACKS......GYLLHG...sNEITCNR.....GKWTL..PPECVEn   392  
F13B_HUMAN_7   395  NCKHp.PVVMNGavadgi......LASYAT..GSSVEYRCNE......YYLLRG...sKISRCEQ.....GKWSS..PPVCLE.   453  
F13B_HUMAN_8   453  PCTVn.VDYMNRnniemkwky...EGKVLH..GDLIDFVCKQ.gydlsPLTPLS...eLSVQCNR.....GEVK...YPLCTRk   518  
F13B_HUMAN_9   523  MCTSp.PLIKHGviisst......VDTYEN..GSSVEYRCFD.....hHFLEGS....REAYCLD.....GMWTT..PPLCLE.   581  
F13B_HUMAN_10  581  PCTLsfTEMEKNnlllkwdfdn..RPHILH..GEYIEFICRGdtypaeLYITGS...iLRMQCDR.....GQLK...YPRCIPr   649  
O01654         317  KCLHalHDPRNGslsfshs.....RSYHEF..EDVATFSCDR......GFDIIG...vPRLKCLSd....GSWSHs.APICQIk   379  

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of the complete sequences
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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