lrr_ref6 - reference 6

Multiple alignment of complete sequences
Multiple alignment of repeats only

Number of sequences              15

Key:

A	LRR repeat - type A
B	LRR repeat - type B
C	LRR repeat - type C
D	LRR repeat - type D
E	LRR repeat - type E
F	LRR repeat - type F
G	LRR repeat - type G
H	LRR repeat - type H
I	LRR repeat - type I
J	LRR repeat - type J
K	LRR repeat - type K
L	LRR repeat - type L
M	LRR repeat - type M
N	LRR repeat - type N
U	LRR repeat - type unknown
LRR_NTerminal	LRR_NTerminal domain

Sequence Name	# Repeats
		40	73	75	98	99	122	123	146	147	170	171	194	195	218	219	242	243	266	267	290	291	314	315	338	339	362	363	386	387	410	411	434	435	458	459	482	483	506	507	529
ALS_HUMAN	20	LRR_NTerminal		A		B		C		A		A		A		C		A		D		A		E		A		A		F		G		A		A		A		B
		40	73	75	98	99	122	123	146	147	170	171	194	195	218	219	242	243	266	267	290	291	314	315	338	339	362	363	386	387	410	411	434	435	458	459	482	483	506	507	528
ALS_MOUSE	20	LRR_NTerminal		A		B		C		A		A		A		C		A		D		A		E		A		A		F		G		A		A		A		B
		40	73	75	98	99	122	123	146	147	170	171	194	195	218	219	242	243	266	267	290	291	314	315	338	339	362	363	386	387	410	411	434	435	458	459	482	483	506	507	529
ALS_PAPPA	20	LRR_NTerminal		A		B		C		A		A		A		C		A		D		A		E		A		A		F		G		A		A		A		B
		40	73	75	98	99	122	123	146	147	170	171	194	195	218	219	242	243	266	267	290	291	314	315	338	339	362	363	386	387	410	411	434	435	458	459	482	483	506	507	528
ALS_RAT	20	LRR_NTerminal		A		B		C		A		A		A		C		A		D		A		E		A		A		F		G		A		A		A		B
		62	89	91	114	115	138	139	160	160	183	184	209	210	230	230	253	254	277	278	300	301	324
PGS1_HUMAN	11	LRR_NTerminal		A		A		A		A		A		A		A		J		A		K
		63	90	92	115	116	139	140	161	161	184	185	210	211	231	231	254	255	278	279	301	302	325
PGS1_BOVIN	11	LRR_NTerminal		A		A		A		A		A		A		A		J		A		K
		53	80	82	105	106	129	130	151	151	174	175	200	201	222	222	245	246	269	270	292	293	316
PGS2_HUMAN	11	LRR_NTerminal		A		A		A		A		A		A		A		J		A		K
		54	81	83	106	107	130	131	152	152	175	176	201	202	223	223	246	247	270	271	293	294	317
PGS2_RABIT	11	LRR_NTerminal		A		A		A		A		A		A		A		J		A		K
		48	75	77	100	101	124	125	146	146	169	170	195	196	217	217	240	241	264	265	287	288	311
PGS2_MOUSE	11	LRR_NTerminal		A		A		A		A		A		A		A		J		A		K
		51	78	80	103	104	127	128	149	149	172	173	198	199	220	220	243	244	267	268	290	291	314
PGS2_CHICK	11	LRR_NTerminal		A		A		A		A		A		A		A		J		A		K
		24	53	54	77	78	101	102	125	126	149	150	173	174	197	198	221	222	245	247	270	271	293
CHAD_BOVIN	11	LRR_NTerminal		U		A		A		A		A		A		A		E		A		A
		43	77	80	103	103	126	128	151	152	175	177	200	201	224	226	249	250	278	279	302	303	326	326	349	351	374	375	399	402	425	428	451	453	476	477	500	502	526	527	550	551	574	577	600	601	624	625	648	649	672	673	700	708	731	733	756	757	780	781	804	805	828	828	851	854	877	879	902	903	926	928	949	949	972	973	996	996	1019	1021	1044	1045	1070	1071	1094
CHAO_DROME	42	LRR_NTerminal		U		U		U		A		U		U		A		U		U		U		U		A		U		U		U		U		A		U		A		A		A		A		A		U		U		U		U		U		U		L		U		U		U		U		U		U		U		U		U		U		U
		20	49	51	74	75	98	99	122	123	146	147	170	171	194	195	218	219	242	243	266	267	290	291	314	315	339	340	363	364	387	388	411
GPV_MOUSE	16	LRR_NTerminal		U		U		A		U		A		A		U		U		A		U		A		A		U		L		C
		17	45	47	70	71	95	96	120	121	144	146	170	172	195	195	219	220	243
FSHR_HUMAN	9	LRR_NTerminal		U		C		U		U		A		U		A		U
		1	32	34	57	58	81	82	105	106	129	130	153	154	177	178	201	202	225	226	249	250	273
A2GL_HUMAN	11	LRR_NTerminal		U		U		A		U		U		U		A		A		A		U

Key:

A	LRR repeat - type A
B	LRR repeat - type B
C	LRR repeat - type C
D	LRR repeat - type D
E	LRR repeat - type E
F	LRR repeat - type F
G	LRR repeat - type G
H	LRR repeat - type H
I	LRR repeat - type I
J	LRR repeat - type J
K	LRR repeat - type K
L	LRR repeat - type L
M	LRR repeat - type M
N	LRR repeat - type N
U	LRR repeat - type unknown
LRR_NTerminal	LRR_NTerminal domain

Multiple alignment of complete sequences
Multiple alignment of repeats only

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