sh3_ref6 - reference 6

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Multiple alignment of repeats only
Name                SH3/SH2
Number of sequences 13


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
conserved domain    ++++++++++


                                                                                                                                                                                                                                                                                                                                                                           ***********************************************************                                                            ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++                                                                                                                                                                                                                                                                                                                                                      
ITK_HUMAN     174  ...................................................................................................................................................mnnfilleeqlikksqqkrrtspsnfkvrffvltkaslayfedrhgkkr..tlkgsielsrikcveivksd.isipchykypfqvvhdnyllyvfapdresrqrwvlalkeetrnnnslvpkyhpnfwmdgkwrccsqleklatgcaqy...................dptknaskkplpptpednrrpl..wepeetvVIALYDYQTNDpQELALRR.NEEYCLLDSS..eiHWWRVqdrngHEGYVPSSYLvekspnnlet.....................................................yewynksisrdkaekllldtgkegafmvrdsrtagt.ytvsvftkavvsenn...............pcikhyhiketndnpkryyvaekyvfdsipllinyhq.hnggglvtrlry.pvcfgrqkapvtaglrygkwvidpseltfvqeigsgqfglvhlgywlnkdkvaiktiregamseedfieeaevmmklshpklvqlygvcleqapiclvfefmehgclsdylrtqrglfa..aetllgmcldvcegmayleeacvihrdlaarnclvgenqvikvsdfgmtrfvlddqytsstgtkfpvkwaspevfsfsryssksdvwsfgvlmwevfsegkipyenrsnsevvedistgfrlykprlasthvyqimnhcwkerpedrpafsrllrqlaeiaesgl..........................................
TEC_MOUSE     181  ...................................................................................................................................................mnfntileeilikrsqqkkktsllnykerlcvlpksvlsyyegraekky...rkgvidiskikcveivknddgvipcqnkfpfqvvhdantlyifapspqsrdrwvkklkeeiknnnnimikyhpkfwadgsyqccrqteklapgceky.......nlfessirktlppapeikkrrppppi.......ppeeenteeiVVAMYDFQATEaHDLRLER.GQEYIILEKN..dlHWWRArdkygSEGYIPSNYVtgkksnnldq.....................................................yewycrntnrskaeqllrtedkeggfmvrdssqpgl.ytvslytkfgg.egs...............sgfrhyhiketatspkkyylaekhafgsipeiieyhk.hnaaglvtrlry.pvstkgknapttagfsydkweinpseltfmrelgsglfgvvrlgkwraqykvaikairegamceedfieeakvmmklthpklvqlygvctqqkpiyivtefmergcllnflrqrqghfs..rdmllsmcqdvcegmeylernsfihrdlaarnclvneagvvkvsdfgmaryvlddqytsssgakfpvkwcppevfnysrfssksdvwsfgvlmweiftegrmpfekntnyevvtmvtrghrlhrpklatkylyevmlrcwqerpegrpsledllrtidelveceetfgr......................................
TXK_HUMAN      85  ....................................................................................................................................................................................................................................................................milssyntiqsvfccccccsvqkrqmrtqislstdeelpekytqhrrpwlsqlsnkkqsntgrvqpskrkplpplppsevaeekiqVKALYDFLPREpCNLALRR.AEEYLILEKY..npHWWKArdrlgNEGLIPSNYVtenkitnlei.....................................................yewyhrnitrnqaehllrqeskegafivrdsrhlgs.ytisvfmgarr.ste...............aaikhyqikkndsgq..wyvaerhafqsipeliwyhq.hnaaglmtrlry.pvglmgsclpatagfsyekweidpselafikeigsgqfgvvhlgewrshiqvaikainegsmseedfieeakvmmklshsklvqlygvciqrkplyivtefmengcllnylrenkgklrk.emllsvcqd.icegmeylerngyihrdlaarnclvsstcivkisdfgmtryvlddeyvssfgakfpikwsppevflfnkyssksdvwsfgvlmwevftegkmpfenksnlqvveaisegfrlyrphlapmsiyevmyscwhekpegrptfaellravteiaetw...........................................
BTK_HUMAN     217  ................................................................................................................................maavilesiflkrsqqkkktsplnfkkrlflltvhklsyyeydfergrrgskkgsidvekitcvetvvpeknppperqiprrgeessemeqisiierfpypfqvvydegplyvfspteelrkrwihqlknvirynsdlvqkyhpcfwidgqylccsqtaknamgcqilenrngslkpgsshrktkkplpptpeedqilkkplppepaaapvstselkkVVALYDYMPMNaNDLQLRK.GDEYFILEES..nlPWWRArdkngQEGYIPSNYVteaeds.iem.....................................................yewyskhmtrsqaeqllkqegkeggfivrdsskagk.ytvsvfakstg.dpq...............gvirhyvvcstpqsq..yylaekhlfstipelinyhq.hnsaglisrlky.pvsqqnknapstaglgygsweidpkdltflkelgtgqfgvvkygkwrgqydvaikmikegsmsedefieeakvmmnlsheklvqlygvctkqrpifiiteymangcllnylremrhrfq..tqqllemckdvceameyleskqflhrdlaarnclvndqgvvkvsdfglsryvlddeytssvgskfpvrwsppevlmyskfssksdiwafgvlmweiyslgkmpyerftnsetaehiaqglrlyrphlasekvytimyscwhekaderptfkillsnildvmdees..........................................
O76133        345  mmgtkhrnshvngsiksssslrsssksfqakmdlmserlydvvksgsmvkraqnkkrftpvnykhrwfeltkrtfsyfdvenverrrergrihlkgvrlveeatvsgeggdpfapdgypfqvgyceisasanshqlengngggsgvgiegqqsgravpqytlyviansekersewirairqvcedsntpksyryhpglwsgkkwscckglsrttfgcraaahwreannnpsngsspaqnstrsispnssttnsqfslqhnssgslgggvggglggggslglggggggggsctptslqpqsslttfkqsptllngngnlldanmpggiptpgtpnskakdnshfvklVVALYPFKAIEgGDLSLEK.NAEYEVIDDS..qeHWWKVkdalgNVGYIPSNYVkpkallgler.....................................................yewyvgdmsrqraesllkqgdkegcfvvrksstkgl.ytlslhtkvpq...................shvkhyhikqnarce..yylsekhccetipdlinyhr.hnsgglacrlksspcdrpvp...ptaglshdkweihpmelmlmeelgsgqfgvvrrgkwrgsidtavkmmkegtmseddfieeakvmtklqhpnlvqlygvcskhrpiyivteymkhgsllnylrrhektlignmgllldmciqvskgmtylerhnyihrdlaarnclvgsenvvkvadfglaryvlddqytssggtkfpikwappevlnytrfssksdvwaygvlmweiftcgkmpygrlkntevvervqrgiilekpkscakeiydvmklcwshgpeerpafrvlmdqlalvaqtltd.........................................
O43639_1        5  ....................................................................................................................................................................................................................................................................................................................................................mteeviVIAKWDYTAQQdQELDIKKvNERLWLLDDS...kTWWRVrnaanRTGYVPSNYVerknslkkgslvknlkdtlglgktrrktsardasptpstdaeypangsgadriydln....................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O43639_2      115  ........................................................................................................................................................................................................................................................................................................................................................ipAFVKFAYVAEReDELSLVK.GSRVTVMEKC..sdGWWRGsyn.gQIGWFPSNYVleevdeaaaespsflslrkgaslsngqgsrvl.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O43639_3      199  ........................................................................................................................................................................................................................................................................................................................................................hvVQTLYPFSSVTeEELNFEK.GETMEVIEKPendpEWWKCknargQVGLVPKNYVvvlsdgpalhpahapqis..ytgpsssgrfag...............................rewyygnvtrhqaqcalnergvegdflirdsesspsdfsvslkas......................gknkhfkvqlvdn....vycigqrrfhtmdelvehyk.kapiftsehgeklylvralq.................................................................................................................................................................................................................................................................................................................................
P79956_1        6  ...................................................................................................................................................................................................................................................................................................................................................mtteeviVVAKFDYVAQQdQELDIKK.NERLWLLDDS...kSWWRVrnstnKTGFVPSNYVerknsarkasivknlkdtlgigkvkrkpsmpdsastaddglpdaerlydln..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................
P79956_2      109  ........................................................................................................................................................................................................................................................................................................................................................mpAYVKFTYAAEReDELSLVK.GTKVIVMEKC..sdGWWRGsyn.gRVGWFPSNYVteendspsgd...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
P79956_3      171  ........................................................................................................................................................................................................................................................................................................................................................hvVQALYPFSSSNeEELNFEK.GEVMDVIEKPendpEWWKCqksngLVGLVPKNYVtimqniqptpsfepvpprcdyigpsasgrfag...............................nqwyygkvtrhqaemalnergnegdflirdsesspndfsvslkaq......................gknkhfkvcmkdc....mycigqrkfstmeelvehyk.kapiftseqgeklylikpls.................................................................................................................................................................................................................................................................................................................................
NCK_HUMAN_1     5  ....................................................................................................................................................................................................................................................................................................................................................maeevvVVAKFDYVAQQeQELDIKK.NERLWLLDDS...kSWWRVrnsmnKTGFVPSNYVerknsarkasivknlkdtlgigkvkrkpsvpdsaspaddsfvdpgerlydln.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................
NCK_HUMAN_2   109  ........................................................................................................................................................................................................................................................................................................................................................mpAYVKFNYMAEReDELSLIK.GTKVIVMEKC..sdGWWRGsyn.gQVGWFPSNYVteegdsplgd...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
NCK_HUMAN_3   171  ........................................................................................................................................................................................................................................................................................................................................................hvVQALYPFSSSNdEELNFEK.GDVMDVIEKPendpEWWKCrkingMVGLVPKNYVtvmqnnpltsglepsppqcdyirpsltgkfag...............................npwyygkvtrhqaemalnerghegdflirdsesspndfsvslkaq......................gknkhfkvqlket....vycigqrkfstmeelvehyk.kapiftseqgeklylvkhls.................................................................................................................................................................................................................................................................................................................................
Q23507_1        4  .....................................................................................................................................................................................................................................................................................................................................................msedyVVVKYDYLAQEeQELTIKK.NERLKLLDDS...kNWWKVmndsnSVGFVPSNYVrkesivdkakgtikglargrnrssdpepeerlngiarlafslnnncavtpssnkipmmssk................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q23507_2      117  ........................................................................................................................................................................................................................................................................................................................................................tkAVVKFTYEPRLeDELGLTK.GDFVYVVEKS..tdGWWKGeapngGVGWFPSNYVeeveastngnqgsienrnpaaaavpapimmqapppklqasrssf.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q23507_3      214  ........................................................................................................................................................................................................................................................................................................................................................evVVALYSFDASSsEELSFKK.GERLEIVDHPehdpDWWMArnasgTTGLVPRNYIevvvndsssskashqdfapqysgn.............................geipmeq...qpwyfgrisreraedlll.hgregeflvrdsesnklqklveklwd..tkvvqtvakpgdlsismrgiernkhfkvqnvdg....llkignrtfvdmnalinhyt.tspifsspteklfltgplpnnpfffwtkqvkisfvisitspvfryvy......................................................................................................................................................................................................................................................................................................
DRK_DROME_1     1  ........................................................................................................................................................................................................................................................................................................................................................meAIAKHDFSATAdDELSFRK.TQILKILNME.ddsNWYRAeld.gKEGLIPSNYIemkn...........................................................hdwyygritradaeklls.nkhegaflirisesspgdfslsvkcp......................dgvqhfkvlrdaqs..kfflwvvk.fnslnelveyhr.tasvsrsqdvklrdmipee..................................................................................................................................................................................................................................................................................................................................
DRK_DROME_2   155  ........................................................................................................................................................................................................................................................................................................................................................mlVQALYDFVPQEsGELDFRR.GDVITVTDRS..deNWWNGeig.nRKGIFPATYVtpyhs........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
GRB2_CHICK_1    1  ........................................................................................................................................................................................................................................................................................................................................................meAIAKYDFKATAdDELSFKR.GDILKVLNEE.cdqNWYKAeln.gKGGFIPKNYIemkp...........................................................hpwffgkiprakaeemlgkqrhdgafliresesapgdfslsvkfg......................ndvqqfkvlrdgag..kyllwvvk.fnslnelvdyhr.stsvsrnqqiflrdieqvpqqp...............................................................................................................................................................................................................................................................................................................................
GRB2_CHICK_2  159  ........................................................................................................................................................................................................................................................................................................................................................tyVQALFDFDPQEeGELGFRR.GDFIQVLDNS..dpNWWKGach.gQTGMFPRNYVtpvnrni......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
grap_human_1    1  ........................................................................................................................................................................................................................................................................................................................................................meSVALYSFQATEsDELAFNK.GDTLKILNME.ddqNWYKAelr.gVEGFIPKNYIrvkp...........................................................hpwysgrisrqlaeeilmkrnhlgafliresesspgefsvsvnyg......................dqvqhfkvlreasg..kyflweek.fnslnelvdfyr.tttiakkrqiflrdeepllkspga.............................................................................................................................................................................................................................................................................................................................
grap_human_2  161  ........................................................................................................................................................................................................................................................................................................................................................cfAQAQFDFSAQDpSQLSFRR.GDIIEVLERP..dpHWWRGrsc.gRVGFFPRSYVqpvhl........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O43726_1        1  ........................................................................................................................................................................................................................................................................................................................................................meAVAKFDFTASGeDELSFHT.GDVLKILSNQ...eEWFKAelg.sQEGYVPKNFIdiqf...........................................................pkwfheglsrhqaenllm.gkevgffiirasqsspgdfsisvrhe......................ddvqhfkvmrdnkg..nyflwtek.fpslnklvdyyr.tnsisrqkqiflrdrtredqrv...............................................................................................................................................................................................................................................................................................................................
O43726_2      156  ........................................................................................................................................................................................................................................................................................................................................................rwARALYDFEALEdDELGFHS.GEVVEVLDSS..npSWWTGrlh.nKLGLFPANYVapmtr........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
conserved domain    ++++++++++
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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