sushi_1_ref6 - reference 6

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Multiple alignment of repeats only
Name                SUSHI/TRYPSIN
Number of sequences 4


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
conserved domain    ++++++++++


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LFC_TACT_1    141  ................................................................................................................................................................................mvlasflvsglvlgilaqqmrpvqsrgvdlglcdetrfeckcgdpgyvfnvpmkqctyfyrwrpyckpcddleakdicpkykrcqeckagldscvtcppnkygtwcsgecqcknggicdqrtgactcrdryegahceilkGCPLl.PSDSQVqev.........RNPPDNPQTIDYSCSP...GFKLKG...vARISCLPnGQWSSf.....PPKCIR...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
LFC_TACT_2    198  ............................................................................................................................................................................................................................................................................................................................ECAKv.SSPEHGkvnap.......SGNMIEGATLRFSCDS...PYYLIG...qETLTCQGnGQWSGq.....IPQCKKlv.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
LFC_TACT_3    259  ............................................................................................................................................................................................................................................................................................................................FCPDl.DPVNHAehqvkigveqk.YGQFPQGTEVTYTCSG...NYFLMG...fNTLKCNPdGSWSGs.....QPSCVKvadrevdcdskavdflddvgepvrihcpagcsltagtvwgtaiyhelssvcraaihagklpnsggavhvvnngpysdflgsdlngikseelkslarsfrfdyvssstagrsgcpdgwfeveencvyvtskqraweraqgvctnmaarlavldkdlipssltetlrgkgltttwiglhrldaekpfvwelmdrsnvvlndnltfwasgepgnetncvyldirdqlqpvwktkscfqpssfacmmdlsdrnka....................................................................................................................................................................................................................................................................................................................................
LFC_TACT_4    575  ............................................................................................................................................................................................................................................................................................................................KCDDp.GPLENGhatlhgqs....IDGFYAGSSIRYSCEV...LHYLSG...tETVTCTTnGTWSAp.....KPRCIKvitcqnppvpsygsveikppsrtnsisrvgspflrlprlplplaraa................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
LFC_TACT_5    684  ............................................................................................................................................................................................................................................................................................................................KPPPk.PRSSQPstvdlaskvklpEGHYRVGSRAIYTCES..rYYELLG...sQGRRCDSnGNWSGr.....PASCIPv.cgrsdsprspf........................................................................................................................................................................................................................................................iwngnsteigqwpwqagisrwlad........hnmwflqcggsllnekwivtaahcvtysataeiidpsqfkiylgkyyrddsrdddyvqvreale..ihvnpnydpg.....nlnfd..ialiqlktpvtlttrvqpiclptdittrehlk..............egtlavvtgwglnenntysemiqqavlpvvaastceegykea....dlpltvtenmfcagykkgrydacsgdsggplvfaddsrterrwvlegivswgspsg........cgkanqyggf.....tkvnvflswirqfi.........
CASP_MESAU_1  299  ..................mgksseawcivlfsvfasfsaeptmhgeilspnypqaypnemektwdievpegfgvrlyfthldmelsenceydsvqiisggveegrlcgqrtsknanspiveefqipynklqvifrsdfsneerftgfaayyaaidvnectdftdvpcshfcnnfiggyfcscppeyflhddmrncgvncsgnvftaligeisspnypnpypensrceyqilleegfqvvvtiqredfdvepadsqgncqdsllfaaknrqfgpfcgngfpgpltiethsntldivfqtdlteqkkgwklryhgdpiPCPKe.ITANSVwape........KAKYVFKDVVKISCVDgfeAVEGNVgstfFYSTCQSnGQWSNs.....RLRCQPv..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
CASP_MESAU_2  364  ............................................................................................................................................................................................................................................................................................................................DCGIp.EPIQNGkvdd........PENTLFGSVIHYSCEEpyyYMEHAE..hgGEYRCAAnGSWVNdelgieLPKCVPv.cgvptepfriqqr......................................................................................................................................................................................................................................................ifggfpakiqsfpwqvffefpr.................aggaligehwvltaahvv.....egnsdps...myvgst.svrmenlanvqklttdr..viihpgwkpgddlstrtnfdndialvrlkdpvkmgptvspiclpgtsseyeps...............egdlglisgwgrterrniviqlrgaklpvtslekcrqvkeenpkaraddyvftsnmicagekg..vdscqgdsggafalpvpnvrdpkfyvaglvswgkk..........cg...tygiy.....tkvknykdwilqtmqensvpsqd
O01654        317  mrflygtaivllycnsvfsaelltahfgnfsspnyprsypdnsnltwnirvqhgyrmsirfstfdledsyedgigscvydyveitesnktvakfcgnyqlfptdapnpskfiytsqnevrvtfvsdysislsgfqahyaqidinecelmetkkrtiiedwdelvvcshycrnvpgsyycgcrpkftldanrhtcvasfcenqvltddnsghisspeypelyakltdcswtiqlreglsvnliferafgieeheeegctydrlevlhksttdiycgnqapgngtvmpmntnlvqlkfhtdlsvekkgfsvrytstriKCLHalHDPRNGslsfshs.....RSYHEFEDVATFSCDR...GFDIIG...vPRLKCLSdGSWSHs.....APICQIkscgvpqflldlpnshiveyenskttysevldvtcnqwygmisgaskwicenskiwtehgglvainnfnnkpvckpicgkklyndpadwiesqa.......................................................................................................................................................................sggkiikrrgewpwmtlvdlgdneakgkygisglngtnycggslvdenivitaahcv......elrnpsditawfgv..ddrsindnivqkrdile..inihqdyenk...rhttpfdsdiavlkldspvtltpvvrpiclpltetekqlpq....ksqnpqhnvntwykgvvtgwgktevgtlsnhllkvrlpfvsnevcqtgydel....yehititenmicagypgghrdackgdsggplmfpd..ritntwflngivsfgdssdr....enfcgqartygay.....tnvgkfidwissfld........
CO2_MOUSE_1    93  ................................................................................................................................................................................................................................mapllalfyllqlgpglaalfcnqnvnitggnftlshgwapgslliyscplgrypspawrkcqsngqwltprssshhtlrssrmvkavckpvRCLAp.SSFENGiyfpr.......LVSYPVGSNVSFECDE...DFTLRG...sPVRYCRPnGLWDGe.....TAVCDNgas............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
CO2_MOUSE_2   155  ............................................................................................................................................................................................................................................................................................................................HCPN..PGISVGtart........GLNFDLGDKVRYRCSS...SNMVLT..gsAERECQSnGVWSGs.....EPICRQpysydfpedvasaldtsltnllgatnptqnlltkslgrkiiiqrsghlnlyllldasqsvtekdfdifkksaelmverifsfevnvtvaiitfasqpktimsilsersqdvtevitsldsasykdhenatgantyevlirvysmmqtqmdrlgmetsawkeirhtiilltdgksnmgdspkkavtrirellsieqnrddyldiyaigvgkldvdwkelnelgskkdgerhafilqdakalqqifehmldvskltdticgvgnmsanasdqertpwqvtfkpksket..............cqgslisdqwvltaahcfh...diqmedhhlwrvnvgd..ptsqhgkeflvedviiapgfnvhakrkq....gisefyaddiallklsrkvkmstharpiclpctvganmalrrspgstckdhetellsqqkvpahfvalngnrlninlrtgpewtrciqavsqnknifpsltnvsevvtdqflcsgmeeeddnpckgesggavfl....grryrffqvglvswglfdpchgssnknlrkkpprgvlprdfhislfrlqpwlrqhldgvldflpl

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
conserved domain    ++++++++++
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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