sh3_2_ref6 - reference 6

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Multiple alignment of repeats only
Name                EF
Number of sequences 6


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


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O61618_1    8  .......mnsavdawavtprerlkyqeqfral.qpqagfvtgaqakgfflqsqlppl.ILGQIWALADTDSDGKMNINEFSIACKLI.nlklrgmdvpkvlppsllssltgdvpsmtprgstsslspldplkgivpavapvvpvvappvavatvisppgvsvpsgptpptsnppsrhtsise.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O61618_2  185  .rapsiesvnqge.wavqaaqkrkytqvfnandrtrsgyltgsqargvlvqsklpqv.TLAQIWTLSDIDGDGRLNCDEFILAMFLC.ekamagekipvtlpqewvppnlrkiksrpgsvsgvvsrpgsqpasrhasvssqsgvgvvdadptaglpgqtsfedkrkenyvkgqaeldrrrkimedqqrkereererkereeadkrekarleaerkqqeelerqlqrqreiemekeeqrkreleakeaarkelekqrqqeweqariaemnaqkereqervlkqkahntqlnvelstlnekikelsqricdtragvtnvktvidgmrtqrdtsmsemsqlkarikeqnakllqltqerakweakskasgaalggenaqqeqlnaafahkqliinqikdkveniskeieskkedintndvqmselkaelsalitkcedlykeydvqrtsvlelkynrknetsvssawdtgsssaweetgttvtdpyavasndisalaapavdlggpapegfvkyqavyefnarnaeeitfvpgdiilvpleqnaepgwlageinghtgwfpesyveklevgevapvaaveapvdaqvadtyndnintssipaasadltaagdveyyiaaypyesaeegdlsfsagemvmvikkegewwtgtigsrtgmfpsnyvqkadvgtastaaaepvesldqettlngnaaytaapveaqeqvyqplpvqepseqpisspgvgaeeahedldtevsqintqsktqssepaesysrpmsrtssmtpgmrakrseiaqviapyeatsteqlsltrgqlimirkktdsgwwegelqakgrrrqigwfpatyvkvlqggrnsgrntpvsgsriemteqildkvialypykaqnddelsfdkddiisvlgrdepewwrgelnglsglfpsnyvgpfvtsgkpakangttkk.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O42287_1   15  maqfgtpfggnldiwaitveerakhdqqfhgl.kptagyitgdqarnfflqsglpqp.VLAQIWALADMNNDGRMDQLEFSIAMKLI.klklqgyplpsilpsnmlkqpvampaaavagfgmsgivgipplaavapvpmpsipvvgmspplvssvptvpplsngapaviqshpafahsatlpksssfgrsvagsqintklqkaq.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
O42287_2  214  .sfdvpapplvve.wavpsssrlkyrqlfnsqdktmsgnltgpqartilmqsslpqs.QLATIWNLSDIDQDGKLTAEEFILAMHLI.dvamsgqplppilppeyippsfrrvrsgsglsimssvsvdqrlpeepeeeepqnadkklpvtfedkkrenfergnlelekrrqalleqqrkeqerlaqleraeqerkererqdqerkrqqdlekqlekqrelerqreeerrkeierreaakrelerqrqlewernrrqellnqrnreqedivvlkakkktlefelealndkkhqlegklqdircrlttqrheiestnksrelriaeithlqqqlqesqqllgkmipekqslidqlkqvqqnslhrdslltlkraletkeigrqqlrdqldeveketraklqeidvfnnqlkelrelynkqqfqkqqdfetekikqkelerktseldklkeedkrrmleqdklwqdrvkqeeerykfqdeekekreesvqkcevekkpeiqekpnkpfhqppepgklggqipwmntekapltinqgdvkvvyyralypfdarshdeitiepgdiimvdesqtgepgwlggelkgktgwfpanyaermpesefpsttkpaaettakptvhvapspvapaaftntstnsnnwadfsstwptnntdkvesdnwdtwaaqpsltvpsagqhrqrsaftpatvtgsspspvlgqgekveglqaqalypwrakkdnhlnfnkndvitvleqqdmwwfgevqgqkgwfpksyvklisgplrkstsidstssespaslkrvsspafkpaiqgeeyismytyesneqgdltfqqgdlivvikkdgdwwtgtvgektgvfpsnyvrpkdseaagsggktgslgkkpeiaqviasyaatapeqltlapgqlilirkknpggwwegelqargkkrqigwfpanyvkllspgtnkstpteppkptslpptcqvigmydyiaqnddelafskgqvinvlnkedpdwwkgelnghvglfpsnyvklttdmdpsqqfrlgvkpaggipatgdrpfilfpfrdgpsllpnafqapplsvvmikfrcftaprfcpdmnvkyini..................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R4_1   15  maqfptpfggsldvwaitveerakhdqqflsl.kpiagfitgdqarnfffqsglpqp.VLAQIWALADMNNDGRMDQVEFSIAMKLI.klklqgyqlpstlppvmkqqpvaissapafgiggiasmppltavapvpmgsipvvgmspplvssvppaavpplangappviqplpafahpaatwpksssfsrsgpgsqlntklqkaq......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R4_2  215  .sfdvasappaae.wavpqssrlkyrqlfnshdktmsghltgpqartilmqsslpqa.QLASIWNLSDIDQDGKLTAEEFILAMHLI.dvamsgqplppvlppeyippsfrrvrsgsgmsvissssvdqrlpeepssedeqqpekklpvtfedkkrenfergsvelekrrqalleqqrkeqerlaqleraeqerkererqeqeakrqlelekqlekqrelerqreeerrkeierreaakrelerqrqlewernrrqellnqrnkeqegtvvlkarrktlefelealndkkhqlegklqdircrlatqrqeiestnksrelriaeithlqqqlqesqqmlgrlipekqilsdqlkqvqqnslhrdslltlkraleakelarqqlreqldeveretrsklqeidvfnnqlkelreihskqqlqkqrsleaarlkqkeqerkslelekqkedaqrrvqerdkqwlehvqqeeqprprkpheedrlkredsvrkkeaeerakpemqdkqsrlfhphqepaklatqapwsttekgpltisaqesvkvvyyralypfesrshdeitiqpgdivmvdesqtgepgwlggelkgktgwfpanyaekipenevptpakpvtdltsapapklalretpaplpvtssepsttpnnwadfsstwpsssnekpetdnwdtwaaqpsltvpsagqlrqrsaftpatatgsspspvlgqgekveglqaqalypwrakkdnhlnfnksdvitvleqqdmwwfgevqgqkgwfpksyvklisgpvrkstsidtgptespaslkrvaspaakpaipgeefiamytyesseqgdltfqqgdvivvtkkdgdwwtgtvgdksgvfpsnyvrlkdsegsgtagktgslgkkpeiaqviasyaatgpeqltlapgqlilirkknpggwwegelqargkkrqigwfpanyvkllspgtskitptelpktavqpavcqvigmydytaqnddelafskgqiinvlnkedpdwwkgevsgqvglfpsnyvklttdmdpsqqwcsdlhlldmltpterkrqgyihelivteenyvndlqlvteifqkplteselltekevamifvnwkelimcnikllkalrvrkkmsgekmpvkmigdilsaqlphmqpyirfcscqlngaaliqqktdeapdfkefvkrlamdprckgmplssfilkpmqrvtrypliiknilentpenhpdhshlkhalekaeelcsqvnegvrekensdrlewiqahvqceglseqlvfnsvtnclgprkflhsgklykaksnkelygflfndfllltqitkplgssgtdkvfspksnlqykmyktpiflnevlvklptdpsgdepifhishidrvytlraesinertawvqkikaaselyietekkkrekaylvrsqratgigrlmvnvvegielkpcrshgksnpycevtmgsqchitktiqdtlnpkwnsncqffirdleqevlcitvferdqfspddflgrteirvadikkdqgskgpvtkclllhevptgeivvrldlqlfdep.......
Q9Z0R6_1   15  maqfptamnggpnmwaitseertkhdkqfdnl.kpsggyitgdqartfflqsglpap.VLAEIWALSDLNKDGKMDQQEFSIAMKLI.klklqgqqlpvvlppimkqppmfsplisarfgmgsmpnlsihqplppvapiatplssatsgtsipplmmpaplvpsvstsslpngtasliqplsipyssstlphassyslmmggfggasiqkaqslidlgsssstssta................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9Z0R6_2  238  slsgnspktgtse.wavpqpsrlkyrqkfnsldkgmsgylsgfqarnallqsnlsqt.QLATIWTLADIDGDGQLKAEEFILAMHLT.dmakagqplpltlppelvppsfrggkqvdsvngtlpsyqktqeeepqkklpvtfedkrkanyergnmelekrrqvlmeqqqreaerkaqkekeewerkqrelqeqewkkqlelekrlekqrelerqreeerrkeierreaakqelerqrrlewerlrrqellsqktreqedivrlssrkkslhleleavngkhqqisgrlqdvqirkqtqktelevldkqcdleimeikqlqqelkeyqnkliylvpekqllneriknmqlsntpdsgisllhkkssekeelcqrlkeqldaleketasklsemdsfnnqlkelresyntqqlaleqlhkikrdklkeierkrleqiqkkkledeaarkakqgkenlwresirkeeeekqkrlqeeksqdktqeeerkaeakqsetasalvnyralypfearnhdemsfssgdiiqvdektvgepgwlygsfqgkfgwfpcnyvekvlssekalspkkallpptvslsatstssqppasvtdyhnvsfsnltvnttwqqksaftrtvspgsvspihgqgqavenlkaqalcswtakkenhlnfskhdvitvleqqenwwfgevhggrgwfpksyvklipgnevqrgepealyaavtkkptstaypvtstaypvgedyialysyssvepgdltftegeeilvtqkdgewwtgsigertgifpsnyvrpkdqenfgnasksgasnkkpeiaqvtsayaasgteqlslapgqlililkkntsgwwqgelqargkkrqkgwfpashvkllgpssertmptfhavcqviamydymannedelnfskgqlinvmnkddpdwwqgetngltglfpsnyvkmttdsdpsqqwcadlqaldtmqpterkrqgyiheliqteerymdddlqlvievfqkrmaeegflteadmalifvnwkelimsntkllralrvrkktggekmpvqmigdilaaelshmqayirfcscqlngatllqqktdedtdfkeflkklasdprckgmplssfllkpmqritrypllirsilentpqshvdhsslklaleraeelcsqvnegvrekensdrlewiqahvqceglaeqlifnsltnclgprkllhsgklyktksnkelhaflfndfllltylvrqfaaasgheklfnskssaqfrmyktpiflnevlvklptdpsgdepvfhishidrvytlrtdninertawvqkikgaseqyidtekkkrekayqarsqktsgigrlmvhvieatelkackpngksnpycevsmgsqsyttrtlqdtlnpkwnfncqffikdlyqdvlcltmfdrdqfspddflgrtevpvakirteqeskgpttrrlllhevptgevwvrfdlqlfeqktll......................................................................................
o95216_1   15  maqfptpfggsldiwaitveerakhdqqfhsl.kpisgfitgdqarnfffqsglpqp.VLAQIWALADMNNDGRMDQVEFSIAMKLI.klklqgyqlpsalppvmkqqpvaissappfgmggiasmppltavapvpmgsipvvgmsptlvssvptaavpplangappviqplpafahpaatlpksssfsrsgpgsqlntklqkaq......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
o95216_2  215  .sfdvasvppvae.wavpqssrlkyrqlfnshdktmsghltgpqartilmqsslpqa.QLASIWNLSDIDQDGKLTAEEFILAMHLI.dvamsgqplppvlppeyippsfrrvrsgsgisvisstsvdqrlpeepvledeqqqlekklpvtfedkkrenfergnlelekrrqalleqqrkeqerlaqleraeqerkererqeqerkrqlelekqlekqrelerqreeerrkeierreaakrelerqrqlewernrrqellnqrnkeqedivvlkakkktlefelealndkkhqlegklqdircrlttqrqeiestnksrelriaeithlqqqlqesqqmlgrlipekqilndqlkqvqqnslhrdslvtlkraleakelarqhlrdqldeveketrsklqeidifnnqlkelreihnkqqlqkqksmeaerlkqkeqerkiielekqkeeaqrraqerdkqwlehvqqedehqrprklheeeklkreesvkkkdgeekgkqeaqdklgrlfhqhqepakpavqapwstaekgpltisaqenvkvvyyralypfesrshdeitiqpgdivmvkgewvdesqtgepgwlggelkgktgwfpanyaekipenevpapvkpvtdstsapapklalretpaplavtssepsttpnnwadfsstwptstnekpetdnwdawaaqpsltvpsagqlrqrsaftpatatgsspspvlgqgekveglqaqalypwrakkdnhlnfnkndvitvleqqdmwwfgevqgqkgwfpksyvklisgpirkstsmdsgssespaslkrvaspaakpvvsgeefiamytyesseqgdltfqqgdvilvtkkdgdwwtgtvgdkagvfpsnyvrlkdsegsgtagktgslgkkpeiaqviasytatgpeqltlapgqlilirkknpggwwegelqargkkrqigwfpanyvkllnpgtskitpteppkstalaavcqvigmydytaqnddelafnkgqiinvlnkedpdwwkgevngqvglfpsnyvklttdmdpsqqwcsdlhlldmltpterkrqgyihelivteenyvndlqlvteifqkplmeselltekevamifvnwkelimcnikllkalrvrkkmsgekmpvkmigdilsaqlphmqpyirfcsrqlngaaliqqktdeapdfkefvkrlemdprckgmplssfilkpmqrvtrypliiknilentpenhpdhshlkhalekaeelcsqvnegvrekensdrlewiqahvqceglseqlvfnsvtnclgprkflhsgklykaknnkelygflfndfllltqitkplgssgtdkvfspksnlqykmyktpiflnevlvklptdpsgdepifhishidrvytlraesinertawvqkikaaselyietekkkrekaylvrsqratgigrlmvnvvegielkpcrshgksnpycevtmgsqchitktiqdtlnpkwnsncqffirdleqevlcitvferdqfspddflgrteirvadikkdqgskgpvtkclllhevptgeivvrldlqlfdep
Q9U2T9_1    5  ..........mtnpwevsdaeyqknfamfgql.tggqpfmdavtarnalmrsnlptq.VLSQIWALSDLDKDGRLDIREYSIAMRLA.lnclagipippqlppsllvvparnapptwpgsrhgsvdysqtlppaidrrmsqsyipsapvsiagtpssrhnsisagsplnnd........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Q9U2T9_2  170  ...rnvfegrqlenwaiphhnklkysqlfnaldkerlgslssqvgrsalglsglptn.VLAHIWFLSDVNKDGKLSVDEYAISQYMI.emfksgfalpkitplelvrmcgissrsanntpelepgaeppqkspapktfedkrqdnlskgqaelerrrrvleeeeqrrraevekkereeeakknrerqekerqaeverqaelerqriieaqreeeekkrrlemerrreedekmrkvqmekakvkqmqvqmpeqkkwnfynqkqqenerlaqrqqrektlqfqlqaldekvidvevdigkakeavaevtgfiermrstrdekvarikelqetnqktaiesqelghqllqkqsahkettqrkselealrrkrdairkaiedaalelstekeksynqteilktnkekyktdvysklvakreeyrnsfellvhaqtharskigefeaksapasaapapapapaptttngfpanfndafgefdktdasqrfdadfgatstadpfaqiaqapahskgavdqsafnihdtykcralfafearsedelsfepgdviivfqshaaepgwragqlrekvgwfpeafveaiaavptpggdppiqnmppnmtpsssvdqigvkaarkaeiaaamglteggappassapaaaavi..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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