sushi_1_ref6 - reference 6

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Multiple alignment of repeats only
Name                SUSHI
Number of sequences 5


Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********


                                                                                                                                                                                                                                                                                                                                                                                   *********************************************************************************                                                                                                                                                                                                                                                                                                                                                                                              
O01654        317  ....................................mrflygtaivllycnsvfsaelltahfgnfsspnyprsypdnsnltwnirvqhgyrmsirfstfdledsyedgigscvydyveitesnktvakfcgnyqlfptdapnpskfiytsqnevrvtfvsdysislsgfqahyaqidinecelmetkkrtiiedwdelvvcshycrnvpgsyycgcrpkftldanrhtcvasfcenqvltddnsghisspeypelyakltdcswtiqlreglsvnliferafgieeheeegctydrlevlhksttdiycgnqapgngtvmpmntnlvqlkfhtdlsvekkgfsvrytstriKClhalHDPRNGslsfshsRSYHEFEDVATFSCDRGFDIIg.........vPRLKCLSd....GSWSHs.....APICQIk.scgvpqflldlpnshiveyenskttysevldvtcnqwygmisgaskwicenskiwtehgglvainnfnnkpvckpicgkklyndpadwiesqasggkiikrrgewpwmtlvdlgdneakgkygisglngtnycggslvdenivitaahcvelrnpsditawfgvddrsindnivqkrdileinihqdyenkrhttpfdsdiavlkldspvtltpvvrpiclpltetekqlpqksqnpqhnvntwykgvvtgwgktevgtlsnhllkvrlpfvsnevcqtgydelyehititenmicagypgghrdackgdsggplmfpdritntwflngivsfgdssdrenfcgqartygaytnvgkfidwissfld..............
Q62223_1      353  mrpaallllpsllallahglsseapitgeghatgiretdgeltaaptpeqsdrgvhfvttaptlkllnhhplleeflqeglereeapqpalpfqpdspthftpsplprltnqdnrpvftsptpavaaaptqphsrekpwnleskppelsitsslppgpsmavptllpedrpsttppsqawtptqegpgdmdrpwvpevmskttglgvegtiatstgsgddeettttiitttvttvqppgpcswnfsgpegsldsptapsspsdvgldcfyyisvypgygveikvenislqegetitveglggpdplplanqsfllrgqvirspthqaalrfqslplpagpgtfhfryqayllSC.hfpRRPAYGdvt....VTSLHPGGSAHFHCATGYQLKg.........aRFLTCLNat..qPFWDSq.....EPVCIAa..cggvirnattgrivspgfpgnysnnltchwlleppesqrlhlhfekvslaedddrliirngnnveappvydsyeveylpiegllssgrhffvefstdssgaaagmalryeafqqr.........................................................................................................................................................................................................................................................................
Q62223_2      528  ................................................................................................................................................................................................................................................................................................................................................................HC..yePFVKYGnfsss..APSYPVGTTVEFSCDPGYTLEq........gsIIIECVDlh..dPQWNEt.....EPACRAv..csgeitd.sagvvlspnwpepygrgqdciwgvhveedkrimldirvlrigsgdvltfydgddltarvlgqysgprghfklftsmadvtiqfqsdpgtsalgyqqgfvihffevprnn.......................................................................................................................................................................................................................................................................
Q62223_3      706  ................................................................................................................................................................................................................................................................................................................................................................TC.pelPEIPNGwknps..QPELVHGTVVTYQCYPGYQVVg.........sSILMCQWd....LSWSEd.....LPSCQRv..t...........................................................................................................................................................................................................................................................................................................................................................................................
Q62223_4      767  ................................................................................................................................................................................................................................................................................................................................................................SC.hdpGDVEHSrrlis..SPKFPVGATVQYVCDQGFVLTg.........sAILTCHDrqagsPKWSDr.....APKCLLe..qfk.........................................................................................................................................................................................................................................................................................................................................................................................
Q62223_5      834  ................................................................................................................................................................................................................................................................................................................................................................PC.hglSAPENGarspe..KRLHPAGATIHFSCAPGYVLKg.........qASIKCVPgh..pSHWSDp.....PPICRAa..sldgfyngrsldvakapaassaldaahlaaaiflplvamvllvggvylyfsrfqgksplqlprthprpynritvesafdnptyetgslsfagderi............................................................................................................................................................................................................................................................................................
CASP_MESAU_1  299  ......................................................mgksseawcivlfsvfasfsaeptmhgeilspnypqaypnemektwdievpegfgvrlyfthldmelsenceydsvqiisggveegrlcgqrtsknanspiveefqipynklqvifrsdfsneerftgfaayyaaidvnectdftdvpcshfcnnfiggyfcscppeyflhddmrncgvncsgnvftaligeisspnypnpypensrceyqilleegfqvvvtiqredfdvepadsqgncqdsllfaaknrqfgpfcgngfpgpltiethsntldivfqtdlteqkkgwklryhgdpiPC..pkEITANSvwape..KAKYVFKDVVKISCVDGFEAVegnvgs...tfFYSTCQSn....GQWSNs.....RLRCQPv..............................................................................................................................................................................................................................................................................................................................................................................................
CASP_MESAU_2  364  ................................................................................................................................................................................................................................................................................................................................................................DC.gipEPIQNGkvdd...PENTLFGSVIHYSCEEPYYYMehae.....hgGEYRCAAn....GSWVNdelgieLPKCVPv..cgvptepfriqqrifggfpakiqsfpwqvffefpraggaligehwvltaahvvegnsdpsmyvgstsvrmenlanvqklttdrviihpgwkpgddlstrtnfdndialvrlkdpvkmgptvspiclpgtsseyepsegdlglisgwgrterrniviqlrgaklpvtslekcrqvkeenpkaraddyvftsnmicagekgvdscqgdsggafalpvpnvrdpkfyvaglvswgkkcgtygiytkvknykdwilqtmqensvpsqd....................................................................................................................
C1R_HUMAN_1   308  .............................................mwllyllvpalfcraggsipipqklfgevtsplfpkpypnnfetttvitvptgyrvklvfqqfdlepsegcfydyvkisadkkslgrfcgqlgsplgnppgkkefmsqgnkmlltfhtdfsneengtimfykgflayyqavdldecasrsksgeedpqpqcqhlchnyvggyfcscrpgyelqedrhscqaecsselyteasgyissleyprsyppdlrcnysirvergltlhlkflepfdiddhqqvhcpydqlqiyangknigefcgkqrppdldtssnavdllfftdesgdsrgwklrytteiiKC.pqpKTLDEFtiiqn.lQPQYQFRDYFIATCKQGYQLIegnqvl...hsFTAVCQDd....GTWHRa.....MPRCKIk..............................................................................................................................................................................................................................................................................................................................................................................................
C1R_HUMAN_2   375  ................................................................................................................................................................................................................................................................................................................................................................DC.gqpRNLPNGdfrytttMGVNTYKARIQYYCHEPYYKMqtragsreseqGVYTCTAq....GIWKNeqkgekIPRCLPv..cgkpvnpveqrqriiggqkakmgnfpwqvftnihgrgggallgdrwiltaahtlypkeheaqsnasldvflghtnveelmklgnhpirrvsvhpdyrqdesynfegdiallelensvtlgpnllpiclpdndtfydlglmgyvsgfgvmeekiahdlrfvrlpvanpqacenwlrgknrmdvfsqnmfcaghpslkqdacqgdsggvfavrdpntdrwvatgivswgigcsrgygfytkvlnyvdwikkemeeed.............................................................................................................................
C1S_HUMAN_1   293  ............................................................mwcivlfsllawvyaeptmygeilspnypqaypsevekswdievpegygihlyfthldielsencaydsvqiisgdteegrlcgqrssnnphspiveefqvpynklqvifksdfsneerftgfaayyvatdinectdfvdvpcshfcnnfiggyfcscppeyflhddmkncgvncsgdvftaligeiaspnypkpypensrceyqirlekgfqvvvtlrredfdveaadsagncldslvfvagdrqfgpycghgfpgplnietksnaldiifqtdltgqkkgwklryhgdpmPC..pkEDTPNSvwepa..KAKYVFRDVVQITCLDGFEVVegrvga...tsFYSTCQSn....GKWSNs.....KLKCQPv..............................................................................................................................................................................................................................................................................................................................................................................................
C1S_HUMAN_2   358  ................................................................................................................................................................................................................................................................................................................................................................DC.gipESIENGkvedp...ESTLFGSVIRYTCEEPYYYMengg......gGEYHCAGn....GSWVNevlgpeLPKCVPv..cgvprepfeekqriiggsdadiknfpwqvffdnpwaggalineywvltaahvvegnreptmyvgstsvqtsrlakskmltpehvfihpgwkllevpegrtnfdndialvrlkdpvkmgptvspiclpgtssdynlmdgdlglisgwgrtekrdravrlkaarlpvaplrkckevkvekptadaeayvftpnmicaggekgmdsckgdsggafavqdpndktkfyaaglvswgpqcgtyglytrvknyvdwimktmqenstpred....................................................................................................................

Key

alpha helix         RED
beta strand         GREEN
core blocks         UNDERSCORE
repeat              **********
Multiple alignment of repeats only
You can also look at the alignment in RSF format, or MSF format
You can also get the unaligned sequences in FASTA format
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