With DoOnlist you can run many analysis on a list.
Select the elements you want to include and press the good button.
Sorry, all displayed buttons may not be working, depending on context...
| AddTagExamples | Use the 'Add tag' value to help me to know in which context you want to run DoOnList
You can add tags in the format key=value (no space around the = , and generally the upper/lowercase is important) * For GxDb I need to know the transcriptomic experiment you want to use : experiment=11 (or use the select for RadarGenerator) * If you know which organism is concerned : organism=Homo_sapiens (please with underscore '_') * For ImAnno use cadre=3 organ=3 for the ear, cadre=1 organ=1 for the eye * If you want to see stamps instead of an HtmlTable for the ImAnno pattern use stamp=yes |
| Help | Displays help about each possible action. |
| SelectAll | Selects the whole list |
| SelectNone | Selects nothing from the list |
| SelectInvert | Inverts the selection |
| DisplayList | Displays the selected elements in an other window allowing you to copy/paste |
| Sort | Sorts the lines in ascending order |
| OnTop | Moves the selected lines at the top of the list |
| Unique | Removes duplicate lines |
| KeepSel | Keeps only selected lines |
| SplitInWords | DoOnlist on the list of all words from the select text |
| Trim | DoOnlist on the list of all lines where ; , : newline are removed |
| BlankSeparator | DoOnlist on the list of all lines where ; , : are replace by blank |
| JoinWithComma | Displays all lines joined with , (comma) as one line to use with copy-paste |
| SaveAs | Saves the selected elements on your computer |
| Archive | Archives the selected elements in a file on the server. To be retrieved later. |
| Retrieve | Calls back an archived list |
| AddTag | Allows you to add information to specify the context in which the process will be run for example experiment=6, cadre=3,organ=3 |
| Cluspack | Runs Cluspack with the values taken from each line |
| GeCo | Redirects to the GeCo Web Site with the list of genes |
| GSEA | Runs a GSEA analysis. Columns are Bidon, ProbesetId, SignalIntensity, Bidon, AnalysisSoftware, RealExp |
| EvoluCode | Displays the Phylogenic EVoluCode |
| IdAcGnForHsap | Displays ID Ac Gn Synonyms and OrfNames |
| HtmlTable | Outputs the list as HtmlTable allowing selections of columns. |
| ShowProbesets | Displays all about the probesets |
| RadarGenerator | Creates a Transcriptomics Radar plot with the selected genenames or probesets. First column must be gene or ps. Last column is experiment or select it. |
| inBackground | Runs the RadarGenerator in Background ... The browser will no more freeze. |
| ClusterList | Displays the list of clusters corresponding to the select cluster context (pkEx pkAs pkCs = the 3 first columns) |
| ClusterComposition | Displays the probeset compisition of the selected cluster. First column must be the pk_cluster |
| InternalRatioBatch | Runs InternalRatioBatch on the selected text in background. Results will be available in DoOnList and HtmlTable |
| GoAnnotation | Displays the GoAnnotation of the selected genes. |
| GoWithGenes | Displays the GOs of the selected genes grouped GO by GO ordered from the must populated |
| GoOverview | Gives an overview of the main GO sets |
| GoEnrichment | Displays the GO Enrichment comparing the current list and the list previously archived and selected in the Retrieve field. |
| ImAnnoCluspack | Runs Cluspack with all annotation values |
| ImAnnoCluspackWithPattern | Runs Cluspack with the values taken from each line (and displays ImAnnoPatterns) |
| StringInteractome | Runs StringInteractome on the list of genenames, probesets or NM. Addtag organism=Homo_sapiens if necessary (default is Mus_musculus) |
| OmimGenemap | Displays the disease associated to human genes (from Genemap from Omim) |
| MorbidMap | Displays the disease associated to human genes (from MorbidMap from Omim) |
| MutDisease | Displays the mutations and disease associated to human genes |
| Phenotype | Displays the phenotypes or functon of human genes |
| ShowImAnno | Displays the ImAnno annotation values |
| ShowMiniature | Shows ImAnno Genes Information with Miniatures |
| ImAnnoImages | Displays the ImAnno images (Tip : you can add a tag show=name) |
| ImAnnoPattern | Displays the ImAnno annotation values with colors |
| ImAnnoPatternAddColumns | Displays the ImAnno annotation values with colors and adds the column 2, 3, 4 ... as other annotation values |
| CorrelateColumn2with3 | Runs a correlation and displays the result as a diagram. Column 1 is genename. Important columns are 2 and 3 |
| CytoTissues | Creates the input files allowing Cytoscape to create an interaction network between tissues |
| RculProbs | Display the Rcul information of the probesets |
| ListOfKN | Display all clusters with sizes |
| CoCluOfK | Display all clusters Ki which have common probesets as Kx (Ki Kx nbKi nbKx nbKiKx %common/minimum) asking Kx at second position |
| ProbsOfK | Displays the probesets of the clusters (Ki Px) asking Px is at second position |
| ClustOfP | Displays the clusters of the probesets (Pi Kx) asking Kx is at second position |
| SeeProbs | Removes the leading P then does the same as ShowProbesets |
| SizesOfClusters | Displays all cluster sizes and their corresponding clusters |
| UpdateFedlord | For management only. Update People data in the Fedlord Database with an other database (first run SynchronizePeople) |
| FromFedlord | For management only. Update People data from the Fedlord Database to an other database (first run SynchronizePeople) |