Species Model NCBI Taxonomy id Whole Taxonomy
Yersinia pestis 1 632
Ectocarpus siliculosus 1 2880
Emiliania huxleyi 1 2903
Chlamydomonas reinhardtii 1 3055
Physcomitrella patens subsp. patens 1 3218
Spinacia oleracea 1 3562
Arabidopsis thaliana 1 3702
Glycine max 1 3847
Solanum tuberosum 1 4113
Zea mays 1 4577
Leishmania major 1 5664
Trichomonas vaginalis 1 5722
Giardia intestinalis 1 5741
Entamoeba histolytica 1 5759
Naegleria gruberi 1 5762
Babesia bovis 1 5865
Theileria parva 1 5875
Paramecium tetraurelia 1 5888
Schistosoma mansoni 1 6183
Echinococcus granulosus 1 6210
Caenorhabditis elegans 1 6239
Ascaris suum 1 6253
Brugia malayi 1 6279
Trichinella spiralis 1 6334
Helobdella robusta 1 6412
Daphnia pulex 1 6669
Ixodes scapularis 1 6945
Acyrthosiphon pisum 1 7029
Tribolium castaneum 1 7070
Bombyx mori 1 7091
Anopheles gambiae 1 7165
Drosophila melanogaster 1 7227
Nasonia vitripennis 1 7425
Strongylocentrotus purpuratus 1 7668
Ciona intestinalis 1 7719
Branchiostoma floridae 1 7739
Latimeria chalumnae 1 7897
Lepisosteus oculatus 1 7918
Danio rerio 1 7955
Astyanax mexicanus 1 7994
Oreochromis niloticus 1 8128
Xenopus tropicalis 1 8364
Chelonia mydas 1 8469
Alligator mississippiensis 1 8496
Gallus gallus 1 9031
Pan troglodytes 1 9598
Homo sapiens 1 9606
Canis lupus familiaris 1 9615
Bos taurus 1 9913
Mus musculus 1 10090
Rattus norvegicus 1 10116
Trichoplax adhaerens 1 10228
Blastocystis hominis 1 12968
Amborella trichopoda 1 13333
Monodelphis domestica 1 13616
Brachypodium distachyon 1 15368
Anolis carolinensis 1 28377
Crassostrea gigas 1 29159
Zostera marina 1 29655
Vitis vinifera 1 29760
Tetranychus urticae 1 32264
Oikopleura dioica 1 34765
Thalassiosira pseudonana 1 35128
Plasmodium falciparum (isolate 3D7) 1 36329
Plasmodiophora brassicae 1 37360
Oryza sativa subsp. japonica 1 39947
Aureococcus anophagefferens 1 44056
Dictyostelium discoideum 1 44689
Nematostella vectensis 1 45351
Rhizopus microsporus 1 58291
Fibrobacter succinogenes (strain ATCC 19169 / S85) 1 59374
Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) 1 64091
Albugo candida 1 65357
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) 1 69014
Ostreococcus tauri 1 70448
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) 1 71421
Nannochloropsis gaditana 1 72520
Bodo saltans 1 75058
Daucus carota subsp. sativus 1 79200
Monosiga brevicollis 1 81824
Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) 1 83332
Escherichia coli (strain K12) 1 83333
Hymenolepis microstoma 1 85433
Helicobacter pylori (strain ATCC 700392 / 26695) 1 85962
Selaginella moellendorffii 1 88036
Staphylococcus aureus (strain NCTC 8325) 1 93061
Desulfococcus oleovorans (strain DSM 6200 / Hxd3) 1 96561
Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) 1 99287
Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) 1 100226
Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) 1 103690
Frankia sp. (strain CcI3) 1 106370
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) 1 107806
Gregarina niphandrodes 1 110365
Actinomyces radicidentis 1 111015
Stanieria cyanosphaera (strain ATCC 29371 / PCC 7437) 1 111780
Scleropages formosus 1 113540
Pediculus humanus subsp. corporis 1 121224
Neisseria meningitidis serogroup B (strain MC58) 1 122586
Strigamia maritima 1 126957
Galdieria sulphuraria 1 130081
Zootermopsis nevadensis 1 136037
Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) 1 156889
Dechloromonas aromatica (strain RCB) 1 159087
Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) 1 169963
Streptococcus pneumoniae (strain ATCC BAA-255 / R6) 1 171101
Agrobacterium fabrum (strain C58 / ATCC 33970) 1 176299
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) 1 187420
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) 1 188937
Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain 56601) 1 189518
Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) 1 190192
Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) 1 190304
Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) 1 190485
Caulobacter crescentus (strain ATCC 19089 / CB15) 1 190650
Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) 1 196627
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) 1 203122
Trichodesmium erythraeum (strain IMS101) 1 203124
Tropheryma whipplei (strain Twist) 1 203267
Koribacter versatilis (strain Ellin345) 1 204669
Bifidobacterium longum (strain NCC 2705) 1 206672
Desulfovibrio alaskensis (strain G20) 1 207559
Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) 1 208964
Shewanella oneidensis (strain MR-1) 1 211586
Exophiala mesophila 1 212818
Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) 1 214684
Musa acuminata subsp. malaccensis 1 214687
Bacillus subtilis (strain 168) 1 224308
Aquifex aeolicus (strain VF5) 1 224324
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) 1 224325
Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680) 1 224326
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) 1 224911
Lottia gigantea 1 225164
Enterococcus faecalis (strain ATCC 700802 / V583) 1 226185
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) 1 226186
Nitrosomonas europaea (strain ATCC 19718 / CIP 103999 / KCTC 2705 / NBRC 14298) 1 228410
Nanoarchaeum equitans (strain Kin4-M) 1 228908
Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) 1 229533
Solibacter usitatus (strain Ellin6076) 1 234267
Candida albicans (strain SC5314 / ATCC MYA-2876) 1 237561
Ustilago maydis (strain 521 / FGSC 9021) 1 237631
Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) 1 240176
Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) 1 243230
Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) 1 243231
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) 1 243232
Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) 1 243233
Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) 1 243273
Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) 1 243274
Treponema pallidum (strain Nichols) 1 243276
Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) 1 243277
Dichelobacter nodosus (strain VCS1703A) 1 246195
Myxococcus xanthus (strain DK 1622) 1 246197
Gloeobacter violaceus (strain PCC 7421) 1 251221
Chroococcidiopsis thermalis PCC 7203 1 251229
Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) 1 257313
Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) 1 263820
Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) 1 264203
Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) 1 264462
Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) 1 265072
Mesoplasma florum (strain ATCC 33453 / NBRC 100688 / NCTC 11704 / L1) 1 265311
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) 1 266117
Rhizobium meliloti (strain 1021) 1 266834
Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) 1 266940
Ralstonia solanacearum (strain GMI1000) 1 267608
Propionibacterium acnes (strain KPA171202 / DSM 16379) 1 267747
Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIB 8255 / S1) 1 269796
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) 1 269798
Thermobifida fusca (strain YX) 1 269800
Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) 1 272557
Chlamydia trachomatis (strain D/UW-3/Cx) 1 272561
Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) 1 272562
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) 1 272569
Lactococcus lactis subsp. lactis (strain IL1403) 1 272623
Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) 1 272624
Mycobacterium leprae (strain TN) 1 272631
Pyrococcus abyssi (strain GE5 / Orsay) 1 272844
Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) 1 272943
Rickettsia prowazekii (strain Madrid E) 1 272947
Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) 1 273057
Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) 1 273068
Cyanidioschyzon merolae (strain 10D) 1 280699
Yarrowia lipolytica (strain CLIB 122 / E 150) 1 284591
Schizosaccharomyces pombe (strain 972 / ATCC 24843) 1 284812
Encephalitozoon cuniculi (strain GB-M1) 1 284813
Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) 1 289376
Arthrobacter aurescens (strain TC1) 1 290340
Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) 1 290398
Thiobacillus denitrificans (strain ATCC 25259) 1 292415
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) 1 300852
Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) 1 309800
Salinibacter ruber (strain DSM 13855 / M31) 1 309807
Candidatus Caldiarchaeum subterraneum 1 311458
Mariprofundus ferrooxydans PV-1 1 314345
Thiomicrospira crunogena (strain XCL-2) 1 317025
Chlorobium luteolum (strain DSM 273 / 2530) 1 319225
Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) 1 321614
Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) 1 323259
Nitrosococcus oceani (strain ATCC 19707 / BCRC 17464 / NCIMB 11848 / C-107) 1 323261
Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) 1 324602
Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) 1 330879
Finegoldia magna (strain ATCC 29328) 1 334413
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) 1 335543
Pelagibacter ubique (strain HTCC1062) 1 335992
Akkermansia muciniphila (strain ATCC BAA-835 / Muc) 1 349741
Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50) 1 351160
Acidothermus cellulolyticus (strain ATCC 43068 / 11B) 1 351607
Trypanosoma cruzi (strain CL Brener) 1 353153
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) 1 367110
Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) 1 369723
Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) 1 373903
Korarchaeum cryptofilum (strain OPF8) 1 374847
Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) 1 376686
Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) 1 379066
Gallionella capsiferriformans (strain ES-2) 1 395494
Caldivirga maquilingensis (strain ATCC 700844 / DSM 13496 / JCM 10307 / IC-167) 1 397948
Amphimedon queenslandica 1 400682
Batrachochytrium dendrobatidis JEL423 1 403673
Phytophthora infestans (strain T30-4) 1 403677
Saccharopolyspora erythraea (strain ATCC 11635 / DSM 40517 / JCM 4748 / NBRC 13426 / NCIMB 8594 / NRRL 2338) 1 405948
Cenarchaeum symbiosum (strain A) 1 414004
Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) 1 418459
Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) 1 425265
Pythium ultimum DAOM BR144 1 431595
Toxoplasma gondii (strain ATCC 50861 / VEG) 1 432359
Nitrosopumilus maritimus (strain SCM1) 1 436308
Aciduliprofundum boonei (strain DSM 19572 / T469) 1 439481
Cryptosporidium muris (strain RN66) 1 441375
Acholeplasma laidlawii (strain PG-8A) 1 441768
Sulcia muelleri (strain GWSS) 1 444179
Elusimicrobium minutum (strain Pei191) 1 445932
Opitutus terrae (strain DSM 11246 / JCM 15787 / PB90-1) 1 452637
Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) 1 457570
Thecamonas trahens ATCC 50062 1 461836
Steroidobacter denitrificans 1 465721
Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) 1 469383
Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) 1 479433
Sphaerobacter thermophilus (strain DSM 20745 / S 6022) 1 479434
Veillonella parvula (strain ATCC 10790 / DSM 2008 / JCM 12972 / Te3) 1 479436
Eggerthella lenta (strain ATCC 25559 / DSM 2243 / JCM 9979 / NCTC 11813 / VPI 0255) 1 479437
Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) 1 485917
Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) 1 485918
Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) 1 511051
Dictyoglomus turgidum (strain Z-1310 / DSM 6724) 1 515635
Kosmotoga olearia (strain TBF 19.5.1) 1 521045
Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) 1 525903
Acidimicrobium ferrooxidans (strain DSM 10331 / JCM 15462 / NBRC 103882 / ICP) 1 525909
Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) 1 526225
Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) 1 530564
Natrialba magadii (strain ATCC 43099 / DSM 3394 / CIP 104546 / JCM 8861/ NBRC 102185 / NCIMB 2190 / MS3) 1 547559
Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) 1 552811
Chlorella variabilis 1 554065
Phaeodactylum tricornutum (strain CCAP 1055/1) 1 556484
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) 1 559292
Brachyspira hyodysenteriae (strain ATCC 49526 / WA1) 1 565034
Nosema ceranae (strain BRL01) 1 578460
Allomyces macrogynus ATCC 38327 1 578462
Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) 1 591001
Capsaspora owczarzaki (strain ATCC 30864) 1 595528
Olsenella uli (strain ATCC 49627 / DSM 7084 / CIP 109912 / JCM 12494 / NCIMB 702895 / VPI D76D-27C) 1 633147
Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) 1 639282
Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) 1 644282
Spizellomyces punctatus DAOM BR117 1 645134
Erysipelothrix rhusiopathiae (strain Fujisawa) 1 650150
Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) 1 653733
Tuber melanosporum (strain Mel28) 1 656061
Acidilobus saccharovorans (strain DSM 16705 / JCM 18335 / VKM B-2471 / 345-15) 1 666510
Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) 1 667014
Thelohanellus kitauei 1 669202
Microbotryum lychnidis-dioicae (strain p1A1 Lamole / MvSl-1064) 1 683840
Terrimicrobium sacchariphilum 1 690879
Fonticula alba 1 691883
Saitoella complicata NRRL Y-17804 1 698492
Arthrobotrys oligospora (strain ATCC 24927 / CBS 115.81 / DSM 1491) 1 756982
Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) 1 760142
Mixia osmundae (strain CBS 9802 / IAM 14324 / JCM 22182 / KY 12970) 1 764103
Desulfurobacterium thermolithotrophum (strain DSM 11699 / BSA) 1 868864
Guillardia theta CCMP2712 1 905079
Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) 1 926550
Anaerolinea thermophila (strain DSM 14523 / JCM 11388 / NBRC 100420 / UNI-1) 1 926569
Salpingoeca rosetta (strain ATCC 50818 / BSB-021) 1 946362
Vavraia culicis (isolate floridensis) 1 948595
Chloracidobacterium thermophilum (strain B) 1 981222
Rozella allomycis CSF55 1 988480
Defluviitoga tunisiensis 1 1006576
Tilletiaria anomala UBC 951 1 1037660
Aureobasidium subglaciale EXF-2481 1 1043005
Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) 1 1097556
Synechocystis sp. (strain PCC 6803 / Kazusa) 1 1111708
Saprolegnia diclina VS20 1 1156394
Sulfuricella denitrificans skB26 1 1163617
Fervidicoccus fontis (strain DSM 19380 / JCM 18336 / VKM B-2539 / Kam940) 1 1163730
Vitrella brassicaformis (strain CCMP3155) 1 1169540
Oxytricha trifallax 1 1172189
Melioribacter roseus (strain JCM 17771 / P3M-2) 1 1191523
Candidatus Kinetoplastibacterium galatii TCC219 1 1208921
Acanthamoeba castellanii str. Neff 1 1257118
Frischella perrara 1 1267021
Eutypa lata (strain UCR-EL1) 1 1287681
Candidatus Nanopusillus sp. Nst1 1 1294122
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 1 1295009
Wallemia ichthyophaga (strain EXF-994 / CBS 113033) 1 1299270
Chthonomonas calidirosea (strain DSM 23976 / ICMP 18418 / T49) 1 1303518
Salinisphaera hydrothermalis C41B8 1 1304275
Perkinsela sp. CCAP 1560/4 1 1314962
Xylona heveae TC161 1 1328760
Calocera viscosa TUFC12733 1 1330018
Gonapodya prolifera JEL478 1 1344416
Ferrovum sp. JA12 1 1356299
Pneumocystis carinii B80 1 1408658
Rhizophagus irregularis DAOM 197198w 1 1432141
Sclerotinia borealis F-4157 1 1432307
Chrysochromulina sp. CCMP291 1 1460289
Marchantia polymorpha subsp. polymorpha 1 1480153
Lokiarchaeum sp. GC14_75 1 1538547
Limnochorda pilosa 1 1555112
Candidatus Thorarchaeota archaeon SMTZ1-45 1 1706444
Hadesarchaea archaeon YNP_45 1 1776334
Candidatus Bathyarchaeota archaeon B24 1 1779368
Anaerosporomusa subterranea 1 1794912