Difference between revisions of "Bird Databases List"
(New page: These database below are available in BIRD System. We could explore these data by BIRD Data Access Protocol =GENBANK DATABASES= *GBEST : GENBANK EST *GBWGS : GENBANK WGS *GBRL ...) |
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| − | These database below are available in BIRD System. We could explore these data by [[BIRD Data Access Protocol]] | + | These database below are available in [[BIRD]] System. We could explore these data by [[BIRD Data Access Protocol]] |
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=UNIPROT DATABASES= | =UNIPROT DATABASES= | ||
*UNIPROT :Swiss-Prot, TrEMB | *UNIPROT :Swiss-Prot, TrEMB | ||
| + | *UNIPROT_VSP : varsplic | ||
=STRUCTURE PDB DATABASE= | =STRUCTURE PDB DATABASE= | ||
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=OTHER= | =OTHER= | ||
| − | *UCSC, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ... | + | *UCSC, Alignments, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ... |
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=ALIAS Database Names= | =ALIAS Database Names= | ||
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Format: EMBL, GENBANK, XML,GEO SOFT, CSV, OBO/OWL, PDB, UMD, Relational Schema (XML Metadata). | Format: EMBL, GENBANK, XML,GEO SOFT, CSV, OBO/OWL, PDB, UMD, Relational Schema (XML Metadata). | ||
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| + | [[Category:Bird_project]] | ||
Latest revision as of 15:43, 12 August 2009
These database below are available in BIRD System. We could explore these data by BIRD Data Access Protocol
Contents
GENBANK DATABASES
- GBEST : GENBANK EST
- GBWGS : GENBANK WGS
- GBRL : GENNANK RELEASE
- GBNEW : GENNANK NEW
- GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW
REFSEQ DATABASES
- REFSEQP :REFSEQ PROTEIN
- REFSEQG :REFSEQ GENOMIC
- REFSEQRNA :REFSEQ RNA
- REFSEQNEW :REFSEQ NEW
- REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW
UNIPROT DATABASES
- UNIPROT :Swiss-Prot, TrEMB
- UNIPROT_VSP : varsplic
STRUCTURE PDB DATABASE
- PDB: Protein Data Bank
GEO DATABASE
- MYGEO [1](SAGE,RNA,CGH)
OTHER
- UCSC, Alignments, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ...
ALIAS Database Names
- PROTEIN: UNIPROT +PDB +REFSEQP
- REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW
- GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW
- NUCLEOTIDE : =GBFULL
Format: EMBL, GENBANK, XML,GEO SOFT, CSV, OBO/OWL, PDB, UMD, Relational Schema (XML Metadata).
