Difference between revisions of "Gscope Project"
(New page: A Gscope Project is a directory tree containing at least following files (suppose REPRETOIREDUGENOME is /genomics/MyProject) * /genomics/MyProject * /genomics/MyProject/beton * /geno...) |
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| − | A [[Gscope]] Project is a directory tree containing | + | A [[Gscope]] Project is a directory tree containing flat files |
| − | + | suppose REPERTOIREDUGENOME is /genomics/''MyProject'' and the suffixe for each Gscope sequence name is BOX | |
| − | + | /genomics/''MyProject''/ (which stands for ./ in following lines) | |
| − | |||
| − | + | ./beton/ | |
| − | + | ./beton/miniconfig | |
| − | |||
| − | + | ./fiches/ | |
| − | + | ./fiches/bornesdespabs (contains the positions for BOX001 to BOX189) | |
| + | ./fiches/lesgenomescomplets | ||
| + | ./fiches/..... (and other flat files) | ||
| + | |||
| + | following directories contain all BOX001 to BOX189 as shown for prottfa | ||
| + | |||
| + | ./prottfa/ | ||
| + | ./prottfa/BOX001 | ||
| + | ./prottfa/BOX002 | ||
| + | ./prottfa/...... | ||
| + | ./prottfa/BOX189 | ||
| + | ./protembl/ | ||
| + | ./protembl/BOX* | ||
and/or | and/or | ||
| − | + | ./nuctfa/ | |
| − | + | ./nuctfa/BOX* | |
| + | ./nucembl/ | ||
| + | ./nucembl/BOX* | ||
| − | * / | + | and why not |
| − | * / | + | ./blastp/ |
| + | ./blastp/BOX* | ||
| + | ./tblastn/ | ||
| + | ./tblastn/BOX* | ||
| + | ./blastpMus_musculus/ | ||
| + | ./blastpMus_musculus/BOX* | ||
| + | ./blastpHomo_sapiens/ | ||
| + | ./blastpHomo_sapiens/BOX* | ||
| − | * / | + | ./msf/ |
| + | ./msf/BOX* | ||
| + | ./msfMus_musculus/ | ||
| + | ./msfMus_musculus/BOX* | ||
etc. | etc. | ||
All these directories and files are automatically created by Gscope. | All these directories and files are automatically created by Gscope. | ||
Latest revision as of 11:52, 16 April 2009
A Gscope Project is a directory tree containing flat files
suppose REPERTOIREDUGENOME is /genomics/MyProject and the suffixe for each Gscope sequence name is BOX
/genomics/MyProject/ (which stands for ./ in following lines)
./beton/ ./beton/miniconfig
./fiches/ ./fiches/bornesdespabs (contains the positions for BOX001 to BOX189) ./fiches/lesgenomescomplets ./fiches/..... (and other flat files)
following directories contain all BOX001 to BOX189 as shown for prottfa
./prottfa/ ./prottfa/BOX001 ./prottfa/BOX002 ./prottfa/...... ./prottfa/BOX189 ./protembl/ ./protembl/BOX*
and/or
./nuctfa/ ./nuctfa/BOX* ./nucembl/ ./nucembl/BOX*
and why not
./blastp/ ./blastp/BOX* ./tblastn/ ./tblastn/BOX* ./blastpMus_musculus/ ./blastpMus_musculus/BOX* ./blastpHomo_sapiens/ ./blastpHomo_sapiens/BOX*
./msf/ ./msf/BOX* ./msfMus_musculus/ ./msfMus_musculus/BOX*
etc.
All these directories and files are automatically created by Gscope.
