Difference between revisions of "Bird Databases List"
(→OTHER) |
|||
| Line 19: | Line 19: | ||
=UNIPROT DATABASES= | =UNIPROT DATABASES= | ||
*UNIPROT :Swiss-Prot, TrEMB | *UNIPROT :Swiss-Prot, TrEMB | ||
| + | *UNIPROT_VSP : varsplic | ||
=STRUCTURE PDB DATABASE= | =STRUCTURE PDB DATABASE= | ||
Latest revision as of 15:43, 12 August 2009
These database below are available in BIRD System. We could explore these data by BIRD Data Access Protocol
Contents
GENBANK DATABASES
- GBEST : GENBANK EST
- GBWGS : GENBANK WGS
- GBRL : GENNANK RELEASE
- GBNEW : GENNANK NEW
- GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW
REFSEQ DATABASES
- REFSEQP :REFSEQ PROTEIN
- REFSEQG :REFSEQ GENOMIC
- REFSEQRNA :REFSEQ RNA
- REFSEQNEW :REFSEQ NEW
- REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW
UNIPROT DATABASES
- UNIPROT :Swiss-Prot, TrEMB
- UNIPROT_VSP : varsplic
STRUCTURE PDB DATABASE
- PDB: Protein Data Bank
GEO DATABASE
- MYGEO [1](SAGE,RNA,CGH)
OTHER
- UCSC, Alignments, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ...
ALIAS Database Names
- PROTEIN: UNIPROT +PDB +REFSEQP
- REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW
- GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW
- NUCLEOTIDE : =GBFULL
Format: EMBL, GENBANK, XML,GEO SOFT, CSV, OBO/OWL, PDB, UMD, Relational Schema (XML Metadata).
