Difference between revisions of "Gscope Project"
| Line 12: | Line 12: | ||
./fiches/lesgenomescomplets | ./fiches/lesgenomescomplets | ||
./fiches/..... (and other flat files) | ./fiches/..... (and other flat files) | ||
| + | |||
| + | following directories contain all BOX001 to BOX189 as shown for prottfa | ||
./prottfa/ | ./prottfa/ | ||
| Line 18: | Line 20: | ||
./prottfa/...... | ./prottfa/...... | ||
./prottfa/BOX189 | ./prottfa/BOX189 | ||
| − | ./protembl/ | + | ./protembl/ |
and/or | and/or | ||
| − | ./nuctfa/ | + | ./nuctfa/ |
| − | ./pnucembl | + | ./pnucembl |
and why not | and why not | ||
| − | ./blastp/ | + | ./blastp/ |
| − | ./tblastn/ | + | ./tblastn/ |
| − | ./blastpMus_musculus/ | + | ./blastpMus_musculus/ |
| − | ./blastpHomo_sapiens/ | + | ./blastpHomo_sapiens/ |
| − | ./msf/ | + | ./msf/ |
| − | ./msfMus_musculus/ | + | ./msfMus_musculus/ |
etc. | etc. | ||
All these directories and files are automatically created by Gscope. | All these directories and files are automatically created by Gscope. | ||
Revision as of 11:49, 16 April 2009
A Gscope Project is a directory tree containing flat files
suppose REPERTOIREDUGENOME is /genomics/MyProject and the suffixe for each Gscope sequence name is BOX
/genomics/MyProject/ (which stands for ./ in following lines)
./beton/ ./beton/miniconfig
./fiches/ ./fiches/bornesdespabs (contains the positions for BOX001 to BOX189) ./fiches/lesgenomescomplets ./fiches/..... (and other flat files)
following directories contain all BOX001 to BOX189 as shown for prottfa
./prottfa/ ./prottfa/BOX001 ./prottfa/BOX002 ./prottfa/...... ./prottfa/BOX189 ./protembl/
and/or
./nuctfa/ ./pnucembl
and why not
./blastp/ ./tblastn/ ./blastpMus_musculus/ ./blastpHomo_sapiens/
./msf/ ./msfMus_musculus/
etc.
All these directories and files are automatically created by Gscope.
