Difference between revisions of "Bird Databases List"
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=OTHER= | =OTHER= | ||
| − | *UCSC, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ... | + | *UCSC, Alignments, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ... |
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=ALIAS Database Names= | =ALIAS Database Names= | ||
Revision as of 07:08, 19 June 2008
These database below are available in BIRD System. We could explore these data by BIRD Data Access Protocol
Contents
GENBANK DATABASES
- GBEST : GENBANK EST
- GBWGS : GENBANK WGS
- GBRL : GENNANK RELEASE
- GBNEW : GENNANK NEW
- GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW
REFSEQ DATABASES
- REFSEQP :REFSEQ PROTEIN
- REFSEQG :REFSEQ GENOMIC
- REFSEQRNA :REFSEQ RNA
- REFSEQNEW :REFSEQ NEW
- REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW
UNIPROT DATABASES
- UNIPROT :Swiss-Prot, TrEMB
STRUCTURE PDB DATABASE
- PDB: Protein Data Bank
GEO DATABASE
- MYGEO [1](SAGE,RNA,CGH)
OTHER
- UCSC, Alignments, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ...
ALIAS Database Names
- PROTEIN: UNIPROT +PDB +REFSEQP
- REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW
- GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW
- NUCLEOTIDE : =GBFULL
Format: EMBL, GENBANK, XML,GEO SOFT, CSV, OBO/OWL, PDB, UMD, Relational Schema (XML Metadata).
