Difference between revisions of "Architecture of Gscope"

Revision as of 17:46, 13 November 2017

The Architecture of Gscope is ... not perfect.

To undestand how it is today we need a brief overview of the Historical Evolution or Evolutionary History of Gscope

Odile Lecompte, Olivier Poch and Raymond Ripp had to annotate the genome of Pirococcus abyssi.

Starting with the DNA sequence of Pyrococcsu abyssi (1765120 bases) we determined the genes and tried to find the function of each protein.

For that we needed to have an interactive visualization tool allowing to show the sequences, blast outputs and multiple alignments.

The Pabyssi gscope project handles ids PAB0001, PAB0002, ... (Numerotation may not be consecutive)

The procedure ListeDesPABs returns the list of all this ids. We use very often :

 foreach Nom [ListeDesPABs] {
     DoSomething $Nom
 }

So since Pabyssi I didn't change the name of this central procedure ...

@@ Line 9: / Line 9: @@
 Starting with the DNA sequence of ''Pyrococcsu abyssi'' (1765120 bases) we determined the genes and tried to find the function of each protein.
-For that we needed to have an interactive visualisation tool allowing to show the sequences, blast outputs and multiple alignments.
+For that we needed to have an interactive visualization tool allowing to show the sequences, blast outputs and multiple alignments.
 [[Images:GscopeBoard.png]]
+The Pabyssi gscope project handles ids PAB0001, PAB0002, ... (Numerotation may not be consecutive)
+The procedure ListeDesPABs returns the list of all this ids.
+We use very often :
+  foreach Nom [ListeDesPABs] {
+      DoSomething $Nom
+  }
+So since Pabyssi I didn't change the name of this central procedure ...