Wscope

Wscope is the web interface of Gscope

It runs as cgi-bin and has access to almost all procedures of Gscope

 http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer?Science&Command&arg1&arg2   (Science is a Gscope Project, Command a procedure)

• http://lbgi.fr/gag/cgi-bin/GscopeServer lists all existing projects are listed
• http://lbgi.fr/gag/cgi-bin/GscopeServer&Science gives access to a guide (GuideMoi)
• http://lbgi.fr/gag/cgi-bin/GscopeServer&Science&FileMoi&BOX001 gives access to all information concerning BOX001 (FileMoi)
• http://lbgi.fr/gag/cgi-bin/GscopeServer&Science&FicheMoi lists all summary files from directory fiches (FicheMoi)
• http://lbgi.fr/gag/cgi-bin/GscopeServer&Science&RechercheMoi allow textual or blast searching (RechercheMoi)

GuideMoi

The most common possible actions are listed BUT

The owner of the Gscope Project can add specific actions for his project by creating the file fiches/WscopeLinksGuideMoi.txt as for example : (notice the use of [WscopeScience] or LbgiUrl] or [PreFixe], etc)

#put here the link and the text todispaly (separated by as many tabulations as you want, at least 1)
# line starting with # are skiped
# empty link and/or text are allowed
#Link								Texte
								
[LbgiUrl]/MeltingTemperatureBioPhp.php				Calculate Melting Temperature
[WscopeScience]&Signal						All Signals
[WscopeScience]&BrocOli&AllHtml					BrocOli ( Broken Oligos = generic oligos )
[WscopeScience]&ShowRestrictionEnzyme				Restriction Enzymes
[WscopeScience]&RestrictionEnzymesStatistics&ShowStatistics	... their Statistics
[WscopeScience]&RestrictionEnzymesStatistics&ShowHits		... their Hits
[WscopeScience]&AffichePof&AllPs				All existing oligos
[WscopeScience]&AfficheVirtualPPCR				All PCR products
[WscopeScience]&AfficheLesRec1					All Rec1 (ie pDONR)
[WscopeScience]&AfficheLesRec2					All Rec2 (ie pDEST)
[WscopeScience]&SpineSummaryOnWeb				Spine Targets Summary
[WscopeScience]&OliWeb						Order oligos (not yet available)

FileMoi

As for GuideMoi the owner can add specific actions for his BOXes by creating the file fiches/WscopeLinksFileMoi.txt (notice the use of $Qui or [Alias $Qui])

#rR WscopeLinksFileMoi.txt
#Ref							Text
[WscopeServer]?ProGS&ShowCloning&$Qui			Show Cloning=<b>All about oligos, PCR products, Recombinaison, etc.</b>
[WscopeServer]?ProGS&CheckRestrictionEnzymes&$Qui&All	RestrictionEnzymes=<b>Check Restriction Enzymes for $Qui</b>
[WscopeServer]?ProGS&FileMoi&infos&$Qui			SeqCheck=<b>See your sequence checking and other infos</b>
[LbgiUrl]/wikili/index.php/Gscope_Clonage		Wiki Gscope=Tout ce que vous aimeriez connaitre sur Gscope Clonage

RechercheMoi

A textual search is done in all infos/BOXxxx files

The Blast search is done in the blast databases found in banques/ (see Blast On Gscope Project)