Gscope Procedures

You'll find here description about Gscope Procedures

 see all procedures with Gscope Chez le Psy

proc Iterator

See the source of proc Iterator

set Name [Iterator New Init $L0 $L1 $L2]
while {[Iterator $Name Next  v0  v1  v2]} { ... } #rR sans $
#rR L2 is the fastest !!!!!!!!!!!!!!!!!!!!
#rR Attention lists are numbered from 0 to 2 (for the caller)
#rR           but are from 2 to 0 in the proc
Iterator $Name Reset
Iterator $Name Destroy
set Info [Iterator Iterator Get ListOf Name]
set Info [Iterator $Name    Get Current 2]    #rR current index de L2
set Info [Iterator $Name    Get Current All]  #rR tous les current L0 L1 L2
set Info [Iterator $Name    Get Max 0]
set Info [Iterator $Name    Get Max All]

proc Go...

Several procs are concerned ... see the source file gscope_go.tcl

• proc GoGo starts from a GO and includes recursively all its children (ATTENTION we use Mus musculus by default)

See the source file proc GoGo

set ListOfPfam         [GoGo "protein binding" PFAM]
set ListOfPfamWithId   [GoGo "protein binding" PFAMxref_key,id]
set ListOfPfamWithDesc [GoGo "GO:0005515"      PFAMxref_key,xrefdesc]
set ListOfGene         [GoGo "protein binding" GENE]
set ListOfGene         [GoGo "protein binding" GENEsymbol]
set ListOfGeneWithDesc [GoGo "GO:0005515"      GENEfull_name,symbol]

• proc GoFromGene Gene Quoi JoinCar RecordsJoinCar

See the source file proc GoGo

set ListOfGO           [GoFromGene PAX6 GO]
set ListOfGOWithAcc    [GoFromGene PAX6 GOacc]
set ListOfGOWithName   [GoFromGene PAX6 GOacc,name]
set ListOfGOWithSource [GoFromGene PAX6 GOacc,a.source_db_id]

• proc GoFromPfam Pfam Quoi JoinCar RecordsJoinCar

See the source file proc GoGo

set ListOfGO           [GoFromPfam PF09088 GO]
set ListOfGOWithAcc    [GoFromPfam PF09088 GOacc]
set ListOfGOWithName   [GoFromPfam PF09088 GOacc,name]
set ListOfGOWithSource [GoFromPfam PF09088 GOacc,a.source_db_id]