Bird Databases List

These database below are available in BIRD System. We could explore these data by BIRD Data Access Protocol

GENBANK DATABASES

• GBEST : GENBANK EST
• GBWGS  : GENBANK WGS
• GBRL  : GENNANK RELEASE
• GBNEW  : GENNANK NEW
• GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW

REFSEQ DATABASES

• REFSEQP  :REFSEQ PROTEIN
• REFSEQG  :REFSEQ GENOMIC
• REFSEQRNA :REFSEQ RNA
• REFSEQNEW :REFSEQ NEW
• REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW

UNIPROT DATABASES

• UNIPROT  :Swiss-Prot, TrEMB

STRUCTURE PDB DATABASE

• PDB: Protein Data Bank

GEO DATABASE

• MYGEO [1](SAGE,RNA,CGH)

OTHER

• UCSC, Alignments, INTERPRO, GO, TAXONOMY, MACSIM, EVI-GENORET (local user), STRING (local user), UMD Data (local user), ...

ALIAS Database Names

• PROTEIN: UNIPROT +PDB +REFSEQP
• REFSEQ : RESEQP FULL=PROTEIN+GENOMIC+RNA+NEW
• GBFULL : GENNANK FULL=EST+RELEASE+WGS+NEW
• NUCLEOTIDE : =GBFULL

Format: EMBL, GENBANK, XML,GEO SOFT, CSV, OBO/OWL, PDB, UMD, Relational Schema (XML Metadata).