Wscope
Wscope is the web interface of Gscope
It runs as cgi-bin and has access to almost all procedures of Gscope
http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer?Science&Command&arg1&arg2 (Science is a Gscope Project, Command a procedure)
- http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer lists all existing projects are listed
- http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer&Science gives access to a guide (GuideMoi)
- http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer&Science&FileMoi&BOX001 gives access to all information concerning BOX001 (FileMoi)
- http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer&Science&FicheMoi lists all summary files fromdirectory fiches (FicheMoi)
- http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer&Science&RechercheMoi allow textual or blast searching (RechercheMoi)
GuideMoi
The most common possible actions are listed BUT
The owner of the Gscope Project can add specific actions for his project by creating the file fiches/WscopeLinksGuideMoi.txt as for example : (notice the use of [WscopeScience] or LbgiUrl] or [PreFixe], etc)
#put here the link and the text todispaly (separated by as many tabulations as you want, at least 1)
# line starting with # are skiped
# empty link and/or text are allowed
#Link Texte
[LbgiUrl]/MeltingTemperatureBioPhp.php Calculate Melting Temperature
[WscopeScience]&Signal All Signals
[WscopeScience]&BrocOli&AllHtml BrocOli ( Broken Oligos = generic oligos )
[WscopeScience]&ShowRestrictionEnzyme Restriction Enzymes
[WscopeScience]&RestrictionEnzymesStatistics&ShowStatistics ... their Statistics
[WscopeScience]&RestrictionEnzymesStatistics&ShowHits ... their Hits
[WscopeScience]&AffichePof&AllPs All existing oligos
[WscopeScience]&AfficheVirtualPPCR All PCR products
[WscopeScience]&AfficheLesRec1 All Rec1 (ie pDONR)
[WscopeScience]&AfficheLesRec2 All Rec2 (ie pDEST)
[WscopeScience]&SpineSummaryOnWeb Spine Targets Summary
[WscopeScience]&OliWeb Order oligos (not yet available)
FileMoi
As for GuideMoi the owner can add specific actions for his BOXes by creating the file fiches/WscopeLinksFileMoi.txt (notice the use of $Qui or [Alias $Qui])
#rR WscopeLinksFileMoi.txt
#Ref Text
[WscopeServer]?ProGS&ShowCloning&$Qui Show Cloning=<b>All about oligos, PCR products, Recombinaison, etc.</b>
[WscopeServer]?ProGS&CheckRestrictionEnzymes&$Qui&All RestrictionEnzymes=<b>Check Restriction Enzymes for $Qui</b>
[WscopeServer]?ProGS&FileMoi&infos&$Qui SeqCheck=<b>See your sequence checking and other infos</b>
[LbgiUrl]/wikili/index.php/Gscope_Clonage Wiki Gscope=Tout ce que vous aimeriez connaitre sur Gscope Clonage
RechercheMoi
A textual search is done in all infos/BOXxxx files
The Blast search is done in the blast databases found in banques/ (see )
