Blast On Gscope Project

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Revision as of 17:28, 6 September 2010 by Ripp (talk | contribs) (New page: Each Gscope Project has a directory '''RepertoireDuGenome/banques''' where you can find the blast databases concerning the project. The owner of the project can create as many blast data...)
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Each Gscope Project has a directory RepertoireDuGenome/banques where you can find the blast databases concerning the project.

The owner of the project can create as many blast database as he wants.

How to create a blast database (for example all proteins) 

 cd $RepertoireDuGenome/prottfa
 cat * > $RepertoireDuGenome/banques/AllProttfa
 cd $RepertoireDuGenome/banques
 formatdb -i AllProttfa -p T

this can be done by 

 gscope CreeUneBanqueBlast AllProttfa

Attention ! if somebody uses Wscope (Gscope on the Web) the first available database will be choosen as default database, so the alphabetic order is important (anyway, the user can check what he wants ...)

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