Difference between revisions of "Gscope Environment Variables"

Revision as of 12:17, 16 April 2009

Gscope needs to know the Gscope Project it has to manage.

For that folllowing environment variables are set with the command (see the file setgscope)

 setgscoperr MyProject

setenv REPERTOIREDUGENOME /genomics/MyProject (the directory which contains the Gscope Project)

the PATH is modified and contains at least
- /home/ripp/gscope/bin
- /home/ripp/mulali
- /bips/EMBOSS/bin
- /bips/bin

Following command are also launched

 setsrs
 setmulali
 setncbi

REPERTOIREDUGENOME and home/ripp/gscope/bin are sufficient to run Gscope

Please see the file setgscope

Revision as of 12:16, 16 April 2009 (view source) Ripp (talk \| contribs) (New page: Gscope needs to now the Gscope Project it has to manage. For that folllowing environment variables are set with the command (see the file [http://www-bio3d-igbmc.u-strasbg.fr/Pou...)		Revision as of 12:17, 16 April 2009 (view source) Ripp (talk \| contribs) Newer edit →
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−	[[Gscope]] needs to ~~now~~ the [[Gscope Project]] it has to manage.	+	[[Gscope]] needs to know the [[Gscope Project]] it has to manage.

	For that folllowing environment variables are set with the command		For that folllowing environment variables are set with the command