Difference between revisions of "Gscope Environment Variables"

Revision as of 12:18, 16 April 2009

Gscope needs to know the Gscope Project it has to manage.

For that folllowing environment variables are set with the command (see the file setgscope)

 setgscoperr MyProject

setenv REPERTOIREDUGENOME /genomics/MyProject (the directory which contains the Gscope Project)

the PATH is modified and contains at least
- /home/ripp/gscope/bin
- /home/ripp/mulali
- /bips/EMBOSS/bin
- /bips/bin

Following command are also launched

 setsrs
 setmulali
 setncbi

REPERTOIREDUGENOME and home/ripp/gscope/bin are sufficient to run Gscope

Please see the file setgscope

@@ Line 2: / Line 2: @@
 For that folllowing environment variables are set with the command
-(see the file [http://www-bio3d-igbmc.u-strasbg.fr/PourGscope/setgscoperr.com setgscope])
+(see the file [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/PourGscope/setgscoperr.com setgscope])
    setgscoperr ''MyProject''
-* setenv REPERTOIREDUGENOME /genomics/MyProject (the directory which contains the Gscope Project)
+* setenv '''REPERTOIREDUGENOME''' /genomics/MyProject (the directory which contains the Gscope Project)
 * setenv NCBI /bips/share/ncbi
 * setenv BLASTDB /catalog/blast
-* the PATH is modified and contains at least
+* the '''PATH''' is modified and contains at least
 ** /home/ripp/gscope/bin
 ** /home/ripp/mulali
@@ Line 25: / Line 25: @@
 REPERTOIREDUGENOME and home/ripp/gscope/bin are sufficient to run Gscope
-Please see the file [http://www-bio3d-igbmc.u-strasbg.fr/PourGscope/setgscoperr.com setgscope]
+Please see the file [http://www-bio3d-igbmc.u-strasbg.fr/~ripp/PourGscope/setgscoperr.com setgscope]