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%%  LaTeX template for BioMed Central  %%
%%     journal article submissions     %%
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%%          <8 June 2012>              %%
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\documentclass{bmcart}

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%\usepackage{amsthm,amsmath}
%\RequirePackage{natbib}
%\RequirePackage[authoryear]{natbib}% uncomment this for author-year bibliography
%\RequirePackage{hyperref}
\usepackage[utf8]{inputenc} %unicode support
%\usepackage[applemac]{inputenc} %applemac support if unicode package fails
%\usepackage[latin1]{inputenc} %UNIX support if unicode package fails


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\def\includegraphic{}
\def\includegraphics{}



%%% Put your definitions there:
\startlocaldefs
\endlocaldefs


%%% Begin ...
\begin{document}

%%% Start of article front matter
\begin{frontmatter}

\begin{fmbox}
\dochead{Research}

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%% Enter the title of your article here     %%
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\title{ORDALIE: digging and mapping knowledge on multiple sequence alignments}

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%%                                          %%
%% Enter the authors here                   %%
%%                                          %%
%% Specify information, if available,       %%
%% in the form:                             %%
%%   <key>={<id1>,<id2>}                    %%
%%   <key>=                                 %%
%% Comment or delete the keys which are     %%
%% not used. Repeat \author command as much %%
%% as required.                             %%
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\author[
   addressref={aff1}, % id's of addresses, e.g. {aff1,aff2}
   corref={aff1},                       % id of corresponding address, if any
   email={luc.moulinier@unistra.fr}   % email address
]{\inits{LM}\fnm{Luc} \snm{Moulinier}}

%% raymond
\author[
   addressref={aff1},
   email={raymond.ripp@unistra.fr}
]{\inits{RR}\fnm{Raymond} \snm{Ripp}}

%% Anne Friedrich
\author[
   addressref={aff2},
   email={anne.friedrich@unistra.fr}
]{\inits{AF}\fnm{Anne} \snm{Friedrich}}

%% Marie Sissler
\author[
   addressref={aff3},
   email={m.sissler@unistra.fr}
]{\inits{MS}\fnm{Marie} \snm{Sissler}}

%% Audrey Defosset
\author[
   addressref={aff1},
   email={audrey.defosset@gmail.com}
]{\inits{AD}\fnm{Audrey} \snm{Defosset}}

%% Jean Muller
\author[
   addressref={aff4, aff5},
   email={jeanmuller@unistra.fr}
]{\inits{JM}\fnm{Jean} \snm{Muller}}

%% oLIVIER pOCH
\author[
   addressref={aff1},
   email={olivier.poch@unistra.fr}
]{\inits{OP}\fnm{Olivier} \snm{Poch}}

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%% Enter the authors' addresses here        %%
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%% Repeat \address commands as much as      %%
%% required.                                %%
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%% CSTB / ICube
\address[id=aff1]{%                           % unique id
  \orgname{Complex Systems and Translational Bioinformatics, ICube, UMR 7357, CNRS, Université de Strasbourg, Fédération de Médecine Translationnelle}, % university, etc
  \street{11, rue Humann},                     %
  \postcode{67000}                                % post or zip code
  \city{Strasbourg},                              % city
  \cny{France}                                    % country
}

%% labo Anne Freidr
\address[id=aff2]{%
  \orgname{Université de Strasbourg, CNRS, Génétique Moléculaire, Génomique, Microbiologie, UMR 7156},
  \street{},
  \postcode{67000}
  \city{Strasbourg},
  \cny{France}
}

%% labo Marie Sissler
\address[id=aff3]{%
  \orgname{Architecture et Réactivité de l'ARN, CNRS, Université de Strasbourg, IBMC},
  \street{15, rue René Descartes},
  \postcode{67084}
  \city{Strasbourg Cedex},
  \cny{France}
}

%% labo Jean Muller => 2 affiliations 
\address[id=aff4]{%
  \orgname{Laboratoire de diagnostic génétique, Institut de Génétique Médicale d'Alsace, Hôpitaux Universitaires de Strasbourg},
  \street{},
  \postcode{67000}
  \city{Strasbourg},
  \cny{France}
}

\address[id=aff5]{%
  \orgname{    Laboratoire de Génétique Médicale, Institut de Génétique Médicale d'Alsace, INSERM U1112, Fédération de Médecine Translationnelle de Strasbourg (FMTS), Université de Strasbourg},
  \street{},
  \postcode{67000}
  \city{Strasbourg},
  \cny{France}
}



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\begin{artnotes}
%\note{Sample of title note}     % note to the article
%%\note[id=n1]{Equal contributor} % note, connected to author
\end{artnotes}

\end{fmbox}% comment this for two column layout


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%% The Abstract begins here                 %%
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%% Please refer to the Instructions for     %%
%% authors on http://www.biomedcentral.com  %%
%% and include the section headings         %%
%% accordingly for your article type.       %%
%%                                          %%
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\begin{abstractbox}

\begin{abstract} % abstract
\parttitle{Background} %if any
Text for this section.

\parttitle{Findings} %if any
Text for this section.

\parttitle{Conclusion} %if any
Text for this section.

\end{abstract}

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%% The keywords begin here                  %%
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%% Put each keyword in separate \kwd{}.     %%
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\begin{keyword}
\kwd{multiple sequence alignment}
\kwd{visualisation}
\kwd{editing}
\kwd{transversal analysis}
\end{keyword}

% MSC classifications codes, if any
%\begin{keyword}[class=AMS]
%\kwd[Primary ]{}
%\kwd{}
%\kwd[; secondary ]{}
%\end{keyword}

\end{abstractbox}
%
%\end{fmbox}% uncomment this for twcolumn layout

\end{frontmatter}

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%% The Main Body begins here                %%
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%% Please refer to the instructions for     %%
%% authors on:                              %%
%% http://www.biomedcentral.com/info/authors%%
%% and include the section headings         %%
%% accordingly for your article type.       %%
%%                                          %%
%% See the Results and Discussion section   %%
%% for details on how to create sub-sections%%
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%% use \cite{...} to cite references        %%
%%  \cite{koon} and                         %%
%%  \cite{oreg,khar,zvai,xjon,schn,pond}    %%
%%  \nocite{smith,marg,hunn,advi,koha,mouse}%%
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%%%%%%%%%%%%%%%%%%%%%%%%% start of article main body
% <put your article body there>

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%% Background %%
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\input{ordali_v2_1.tex}
%\input{orda_v2.tex}

%\nocite{oreg,schn,pond,smith,marg,hunn,advi,koha,mouse}

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\begin{backmatter}

\section*{Ethics approval and consent to participate}
Not applicable.
\section*{Consent for publication}
Not applicable.
\section*{Availability of data and materials}
Not applicable.

\section*{Competing interest}
Not applicable.

\section*{Funding}
This work was funded by Institute funds from the french Cnetre National de la Recherche Scientifique and University of Strasbourg.
\section*{Author's contributions}
All authors read and approved the final manuscript.

\section*{Acknowledgements}
The authors want to thanks the BICS and BISTRO platfor their assistance.
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\section*{Figures}
\begin{figure}[h!]
  \caption{\csentence{Sample figure title.}
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\end{figure}

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\caption{Sample table title. This is where the description of the table should go.}
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        \hline
           & B1  &B2   & B3\\ \hline
        A1 & 0.1 & 0.2 & 0.3\\
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\section*{Additional Files}
  \subsection*{Additional file 1 --- Sample additional file title}
    Additional file descriptions text (including details of how to
    view the file, if it is in a non-standard format or the file extension).  This might
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\end{backmatter}
\end{document}
