Monday, 22 July 2019 17:19:43
Summary of Codon biais results
3003 PDB chains
1211 PDB ok
1211 chains ok
735 unique UniProt ok
Alignments
wobble table based on this page
Article : tRNA genes and retroelements in the yeast genome. J Hani and H Feldmann Nucleic Acids Res. 1998 Feb 1; 26(3): 689696.
Distribution of protein lengths
Length distribution :
0 - 20 | 20 - 50 | 50 - 100 | 100 - 200 | 200 - 300 | 300 - 400 | 400 - 500 | 500 - 10000 |
12 | 28 | 51 | 103 | 117 | 75 | 45 | 60 |
Explications basiques
Pour les calculs, on prend les protéines de longueur > 200 aas, soit 493 protéines
Clusterings on data
Pour aller aux clusters triés (cd Petite Explication) chercher 'highest' dans la page. Attention ! il y a évidemment 1 'highest' par threshold !
Enrichment tests based on clustering mixture model - aic, threshold 60.
Take first cluster, 255 proteins over 493
See the web site GO enrichment in Gene Ontology
GO : biologicla process
GO : molecular function
GO : cellular component
Enrichment based on all proteins
Biological Process
Molecular Function
Cellular Component
Données brutes