BanBI

Les BANques BioInformatiques du CSTB

ICube et Université de Strasbourg

• banbi Help
• banbi puts DbDBSummary
• banbi puts DbDBGet ListOf Nom
• banbi putl DbDBGet All Nice

Aperçu des banques

• IDMapping

  	    IDMapping Help
  	    IDMapping ACC ID P12345
  	    IDMapping ACC+ID REFSEQ P12345
  	    IDMapping ACC+ID REFSEQ P12345,TRFE_RAT
  	    IDMapping REFSEQ ACC XP_002711597
  	    IDMapping Hits P12345,TRFE_RAT
  	    
  
  	    IDMapping can be called within gscope or ordali
  	    ... Or from the command line, for that :
  	    ...    module load idmapping
  	    ...    idmapping
  	    ... or IDMapping
  	    
  	  

• UniProt

	  UniProt -help
	  UniProt P12345
	  UniProt P12345,TRFE_RAT
	  UniProt P12345,TRFE_RAT +QY,+AC,SE
	    

	    UniProt can be called within gscope or ordali
	    ... Or from the command line, for that :
	    ...    module load genequid
	    ...    qgq UniProt
	    UniProt-sw queries only sw  and UniProt-trembl queries trembl
	    UniProt queries first sw and if nothing is found it queries trembl
	    
	

• InterPro

	  InterPro -help
	  InterPro P12345
	  InterPro P12345,TRFE_RAT
	    

	    InterPro can be called within gscope or ordali
	    ... Or from the command line, for that :
	    ...    module load genequid
	    ...    qgq InterPro
	    
	

• blast-nr blast-pdb blast-sw blast-trembl blast-uniref50
• GOA
• GeneOntology
• Taxonomy

CRBS Centre de Recherche en Biomédecine de Strasbourg
1 rue Eugène Boeckel, 67000 Strasbourg