Difference between revisions of "Blast On Gscope Project"
(New page: Each Gscope Project has a directory '''RepertoireDuGenome/banques''' where you can find the blast databases concerning the project. The owner of the project can create as many blast data...) |
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Revision as of 16:28, 6 September 2010
Each Gscope Project has a directory RepertoireDuGenome/banques where you can find the blast databases concerning the project.
The owner of the project can create as many blast database as he wants.
How to create a blast database (for example all proteins)
cd $RepertoireDuGenome/prottfa cat * > $RepertoireDuGenome/banques/AllProttfa cd $RepertoireDuGenome/banques formatdb -i AllProttfa -p T
this can be done by
gscope CreeUneBanqueBlast AllProttfa
Attention ! if somebody uses Wscope (Gscope on the Web) the first available database will be choosen as default database, so the alphabetic order is important (anyway, the user can check what he wants ...)