Difference between revisions of "Gscope Procedures"
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Several procs are concerned ... see the source file [http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer?EVImm&FicheMoi&rR/gscope/gscope_go.tcl gscope_go.tcl] | Several procs are concerned ... see the source file [http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer?EVImm&FicheMoi&rR/gscope/gscope_go.tcl gscope_go.tcl] | ||
See the source file [http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer?Zero&AfficheLaProc&GoGetFromPfam proc GoGetFromPfam] | See the source file [http://lbgi.igbmc.fr/gag/cgi-bin/GscopeServer?Zero&AfficheLaProc&GoGetFromPfam proc GoGetFromPfam] | ||
− | GoGetFromGene returns ''what you need'' about all its GO | + | * GoGetFromGene returns ''what you need'' about all its GO |
<source lang="tcl"> | <source lang="tcl"> | ||
set ListOfGO [GoGetFromFromPfam PF09088 GO] | set ListOfGO [GoGetFromFromPfam PF09088 GO] |
Revision as of 11:22, 25 April 2009
You'll find here description about Gscope Procedures
see all procedures with Gscope Chez le Psy
Contents
proc Iterator
See the source of proc Iterator
set Name [Iterator New Init $L0 $L1 $L2]
while {[Iterator $Name Next v0 v1 v2]} { ... } #rR sans $
#rR L2 is the fastest !!!!!!!!!!!!!!!!!!!!
#rR Attention lists are numbered from 0 to 2 (for the caller)
#rR but are from 2 to 0 in the proc
Iterator $Name Reset
Iterator $Name Destroy
set Info [Iterator Iterator Get ListOf Name]
set Info [Iterator $Name Get Current 2] #rR current index de L2
set Info [Iterator $Name Get Current All] #rR tous les current L0 L1 L2
set Info [Iterator $Name Get Max 0]
set Info [Iterator $Name Get Max All]
proc GoGetFromGo {Go GENEofPFAMwhatyouneed JoinCar RecordsJoinCar}
Several procs are concerned ... see the source file gscope_go.tcl See the source file proc GoGo
- GoGetFromGo starts from a GO and includes recursively all its children (ATTENTION we use Mus musculus by default) and return what you need about its GENEs or PFAMs
set ListOfPfam [GoGetFromGo "protein binding" PFAM]
set ListOfPfamWithId [GoGetFromGo "protein binding" PFAMxref_key,id]
set ListOfPfamWithDesc [GoGetFromGo "GO:0005515" PFAMxref_key,xrefdesc]
set ListOfGene [GoGetFromGo "protein binding" GENE]
set ListOfGene [GoGetFromGo "protein binding" GENEsymbol]
set ListOfGeneWithDesc [GoGetFromGo "GO:0005515" GENEfull_name,symbol]
proc GoGetFromGene {Gene GOwhatyouneed JoinCar RecordsJoinCar}
Several procs are concerned ... see the source file gscope_go.tcl See the source file proc GoGetFromPfam
- GoGetFromGene returns what you need about all its GO
set ListOfGO [GoGetFromGene PAX6 GO]
set ListOfGOWithAcc [GoGetFromFromGene PAX6 GOacc]
set ListOfGOWithName [GoGetFromFromGene PAX6 GOacc,name]
set ListOfGOWithSource [GoGetFromFromGene PAX6 GOacc,a.source_db_id]
proc GoGetFromPfam {Pfam GOwhatyouneed JoinCar RecordsJoinCar}
Several procs are concerned ... see the source file gscope_go.tcl See the source file proc GoGetFromPfam
- GoGetFromGene returns what you need about all its GO
set ListOfGO [GoGetFromFromPfam PF09088 GO]
set ListOfGOWithAcc [GoGetFromFromPfam PF09088 GOacc]
set ListOfGOWithName [GoGetFromFromPfam PF09088 GOacc,name]
set ListOfGOWithSource [GoGetFromFromPfam PF09088 GOacc,a.source_db_id]