Gscope Environment Variables

Gscope needs to know the Gscope Project it has to manage.

For that folllowing environment variables are set with the command (see the file setgscope)

 setgscoperr MyProject

• setenv REPERTOIREDUGENOME /genomics/MyProject (the directory which contains the Gscope Project)

• setenv NCBI /bips/share/ncbi
• setenv BLASTDB /catalog/blast

• the PATH is modified and contains at least
  • /home/ripp/gscope/bin
  • /home/ripp/mulali
  • /bips/EMBOSS/bin
  • /bips/bin

Following command are also launched

 setsrs
 setmulali
 setncbi

REPERTOIREDUGENOME and home/ripp/gscope/bin are necessary and sufficient to run Gscope in visualisation mode.

Please see the file setgscope