GeneNames

From Wikili
Revision as of 17:01, 13 June 2008 by Ripp (talk | contribs) (Test it)
Jump to: navigation, search

GeneNames are the most important link between genes ...

Gscope has now following functions to manipulate the gene names. See the test at below

  • HGNC integrates a download from the HUGO Gene Nomenclature Committee
    • HGNC ListOf Header
    • HGNC ListOf HGNC_ID
    • HGNC ListOf GeneName
    • HGNC ListOf Synonym
    • HGNC ListOf SynoTxt
    • HGNC Pax6
    • HGNC Pax6 header (within HGNC ListOf Header)
  • MGI integrates a download from Mouse Genome Informatics concerning the gene alias for the mouse
    • MGI ListOf Header
    • MGI ListOf MGIID
    • MGI ListOf GeneName
    • MGI Pax6
    • MGI Pax6 header (within HGNC ListOf Header)
  • MGIHGNC integrates a download from Mouse Genome Informatics concerning the ortholgy between Mouse and Human
    • MGIHGNC ListOf Header
    • MGIHGNC ListOf MGIID
    • MGIHGNC ListOf GeneName
    • MGIHGNC Pax6
    • MGIHGNC Pax6 header (within MGIHGNC ListOf Header)
  • MouseFromHuman combines these programs
    • MouseFromHuman ListOf Header
    • MouseFromHuman ListOf GeneName
  • HumanFromMouse combines these programs
    • FromHumanFromMouse ListOf Header
    • FromHumanFromMouse ListOf GeneName
    • FromHumanFromMouse Pax6
    • FromHumanFromMouse Pax6 header (within MouseFromHuman ListOf Header)
    • FromHumanFromMousePax6 One_Genename (the most important)
    • MouseFromHuman Pax6
    • MouseFromHuman Pax6 header (within MouseFromHuman ListOf Header)
    • MouseFromHuman Pax6 One_Genename (the most important)

Test it

  • get all about RdCVF in the Mouse in the Human
  • get
    • Starting with the Human gene name RdCVF find the ortholog in the Mouse
    • Starting with the Mouse gene name RdCVF find the ortholog in the Human