GeneNames

GeneNames are the most important link between genes ...

Gscope has now following functions to manipulate the gene names. See the test at below

• HGNC integrates a download from the HUGO Gene Nomenclature Committee
  • HGNC ListOf Header
  • HGNC ListOf HGNC_ID
  • HGNC ListOf GeneName
  • HGNC ListOf Synonym
  • HGNC ListOf SynoTxt
  • HGNC Pax6
  • HGNC Pax6 header (within HGNC ListOf Header)
• MGI integrates a download from Mouse Genome Informatics concerning the gene alias for the mouse
  • MGI ListOf Header
  • MGI ListOf MGIID
  • MGI ListOf GeneName
  • MGI Pax6
  • MGI Pax6 header (within HGNC ListOf Header)
• MGIHGNC integrates a download from Mouse Genome Informatics concerning the ortholgy between Mouse and Human
  • MGIHGNC ListOf Header
  • MGIHGNC ListOf MGIID
  • MGIHGNC ListOf GeneName
  • MGIHGNC Pax6
  • MGIHGNC Pax6 header (within MGIHGNC ListOf Header)
• MouseFromHuman combines these programs
  • MouseFromHuman ListOf Header
  • MouseFromHuman ListOf GeneName
• HumanFromMouse combines these programs
  • FromHumanFromMouse ListOf Header
  • FromHumanFromMouse ListOf GeneName
  • FromHumanFromMouse Pax6
  • FromHumanFromMouse Pax6 header (within MouseFromHuman ListOf Header)
  • FromHumanFromMousePax6 One_Genename (the most important)
  • MouseFromHuman Pax6
  • MouseFromHuman Pax6 header (within MouseFromHuman ListOf Header)
  • MouseFromHuman Pax6 One_Genename (the most important)

Test it

• get all about RdCVF in the Mouse in the Human
• get
  • Starting with the Human gene name RdCVF find the ortholog in the Mouse
  • Starting with the Mouse gene name RdCVF find the ortholog in the Human