Difference between revisions of "Gscope"
| Line 12: | Line 12: | ||
* it allows also | * it allows also | ||
** the creation and feeding of SQL relational databases | ** the creation and feeding of SQL relational databases | ||
| − | ** the quering and display of the available information through a web based interface | + | ** the quering and display of the available information through a web based interface ([http://www-bio3d-igbmc.u-strasbg.fr/~ripp/cgi-bin/gsceop_html_server.tcsh Wscope]) |
==Usage== | ==Usage== | ||
| − | * Gscope works on a [[Gscope Project]] | + | * Gscope works on a [[Gscope Project]] (a complete genome, a set of proteins, a set of genes, etc.) |
| − | |||
* To run Gscope you need to define the corresponding project. | * To run Gscope you need to define the corresponding project. | ||
Revision as of 11:53, 16 April 2009
What is Gscope ?
New : Gscope knows a lot about GeneNames
- Gscope is an integrated platform allowing the analysis of all kind of genomic data.
- Gscope is written in Tcl/Tk and runs on all systems.
- Gscope is specially designed to perform high throughput analysis.
- Gscope is mainly composed of
- all tools necessary to create the basic data
- analysis tools
- visualisation interface
- it allows also
- the creation and feeding of SQL relational databases
- the quering and display of the available information through a web based interface (Wscope)
Usage
- Gscope works on a Gscope Project (a complete genome, a set of proteins, a set of genes, etc.)
- To run Gscope you need to define the corresponding project.
setgscoperr MyProject gscope
- If the project already exists the Gscope Environment Variables are setted.
- If it concerns a new project the directories are created and th evariables are setted. (see New Gscope Project)
Gscope has some specific applications
- Gscope Clonage to design, order and manage oligos for Structural Genomics, it's a first step to a LIMS
