Difference between revisions of "Gscope"
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gscope | gscope | ||
| − | * If the project already exists the [[Gscope Environment Variables]] are | + | * If the project already exists the [[Gscope Environment Variables]] are set. |
| − | * If it concerns a new project the directories are created and | + | * If it concerns a new project the directories are created and the variables are set. (see [[New Gscope Project]]) |
==Gscope has some specific applications== | ==Gscope has some specific applications== | ||
Revision as of 11:55, 16 April 2009
What is Gscope ?
New : Gscope knows a lot about GeneNames
- Gscope is an integrated platform allowing the analysis of all kind of genomic data.
- Gscope is written in Tcl/Tk and runs on all systems.
- Gscope is specially designed to perform high throughput analysis.
- Gscope is mainly composed of
- all tools necessary to create the basic data
- analysis tools
- visualisation interface
- it allows also
- the creation and feeding of SQL relational databases
- the quering and display of the available information through a web based interface (Wscope)
Usage
- Gscope works on a Gscope Project (a complete genome, a set of proteins, a set of genes, etc.)
- To run Gscope you need to define the corresponding project.
setgscoperr MyProject gscope
- If the project already exists the Gscope Environment Variables are set.
- If it concerns a new project the directories are created and the variables are set. (see New Gscope Project)
Gscope has some specific applications
- Gscope Clonage to design, order and manage oligos for Structural Genomics, it's a first step to a LIMS
