Difference between revisions of "Gscope Project"
| Line 1: | Line 1: | ||
| − | A [[Gscope]] Project is a directory tree containing | + | A [[Gscope]] Project is a directory tree containing flat files |
| − | + | suppose REPERTOIREDUGENOME is /genomics/''MyProject'' and the suffixe for each Gscope sequence name is BOX | |
| − | ./beton | + | /genomics/''MyProject''/ (which stands for ./ in following lines) |
| + | |||
| + | ./beton/ | ||
./beton/miniconfig | ./beton/miniconfig | ||
| − | ./fiches | + | ./fiches/ |
| − | ./fiches/bornesdespabs | + | ./fiches/bornesdespabs (contains the positions for BOX001 to BOX189) |
./fiches/lesgenomescomplets | ./fiches/lesgenomescomplets | ||
| + | ./fiches/..... (and other flat files) | ||
| − | ./prottfa | + | ./prottfa/ |
| − | ./protembl | + | ./prottfa/BOX001 |
| + | ./prottfa/BOX002 | ||
| + | ./prottfa/...... | ||
| + | ./prottfa/BOX189 | ||
| + | ./protembl/ (with all BOX) | ||
and/or | and/or | ||
| − | ./nuctfa | + | ./nuctfa/ (with all BOX) |
| − | ./pnucembl | + | ./pnucembl (with all BOX) |
and why not | and why not | ||
| − | ./blastp | + | ./blastp/ (with all BOX) |
| − | ./tblastn | + | ./tblastn/ (with all BOX) |
| − | ./blastpMus_musculus | + | ./blastpMus_musculus/ (with all BOX) |
| − | ./blastpHomo_sapiens | + | ./blastpHomo_sapiens/ (with all BOX) |
| − | ./msf | + | ./msf/ (with all BOX) |
| − | ./msfMus_musculus | + | ./msfMus_musculus/ (with all BOX) |
etc. | etc. | ||
All these directories and files are automatically created by Gscope. | All these directories and files are automatically created by Gscope. | ||
Revision as of 12:48, 16 April 2009
A Gscope Project is a directory tree containing flat files
suppose REPERTOIREDUGENOME is /genomics/MyProject and the suffixe for each Gscope sequence name is BOX
/genomics/MyProject/ (which stands for ./ in following lines)
./beton/ ./beton/miniconfig
./fiches/ ./fiches/bornesdespabs (contains the positions for BOX001 to BOX189) ./fiches/lesgenomescomplets ./fiches/..... (and other flat files)
./prottfa/ ./prottfa/BOX001 ./prottfa/BOX002 ./prottfa/...... ./prottfa/BOX189 ./protembl/ (with all BOX)
and/or
./nuctfa/ (with all BOX) ./pnucembl (with all BOX)
and why not
./blastp/ (with all BOX) ./tblastn/ (with all BOX) ./blastpMus_musculus/ (with all BOX) ./blastpHomo_sapiens/ (with all BOX)
./msf/ (with all BOX) ./msfMus_musculus/ (with all BOX)
etc.
All these directories and files are automatically created by Gscope.
