Gscope Project

A Gscope Project is a directory tree containing flat files

suppose REPERTOIREDUGENOME is /genomics/MyProject and the suffixe for each Gscope sequence name is BOX

 /genomics/MyProject/   (which stands for ./ in following lines)

 ./beton/
 ./beton/miniconfig

 ./fiches/
 ./fiches/bornesdespabs (contains the positions for BOX001 to BOX189) 
 ./fiches/lesgenomescomplets
 ./fiches/..... (and other flat files)

 ./prottfa/
 ./prottfa/BOX001
 ./prottfa/BOX002
 ./prottfa/......
 ./prottfa/BOX189
 ./protembl/    (with all BOX)

and/or

 ./nuctfa/     (with all BOX)
 ./pnucembl    (with all BOX)

and why not

 ./blastp/     (with all BOX)
 ./tblastn/    (with all BOX)
 ./blastpMus_musculus/    (with all BOX)
 ./blastpHomo_sapiens/    (with all BOX)

 ./msf/                (with all BOX)
 ./msfMus_musculus/    (with all BOX)

etc.

All these directories and files are automatically created by Gscope.

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