RUXG_HUMAN 2019

Gene Name RUXG

Description Small nuclear ribonucleoprotein G

Length 76

9606

Sequence

>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV

Domains

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What is the source the Gene Ontology annotation?

The Gene Ontology annotations are retrieved from the EBI's QuickGO webservice. Further informations are available in the external data sources section

What is the quality of these annotations?

For now, all GO term annotations, regardless of their evidence code, are displayed. No quality filter are used to provide the widest possible range of annotations. You can check the labels near each annotation for evidence details: manually reviewed annotations are displayed in blue, while the automatic ones are in grey.

Help

What is the source the domain annotation?

The domain annotations are dynamically queried from the Interpro database, using EBI webservice.

The source of these annotations is represented by a color code (see legend). You can access the corresponding Uniprot entries in Interpro by clicking on the synthetic representation of each domain.

Help

What are the distances?

The distances shown here are Jaccard distances, which are adapted to binary profiles (presence/absence).

How are they computed?

Distances between two protein of a given species are computed on phylogenetic profile of each protein in model species of the considered database.

Threshold

The goal of this section is to provide proteins with similar distributions to the query, to that end, we set a maximum threshold at 0.4

Proteins with similar distribution in the three Life domains

Identifier

Description

Distance between phylogenetic profiles

RUXGL_HUMAN

Putative small nuclear ribonucleoprotein G-like protein 15

0.275

PAPOA_HUMAN

Poly(A) polymerase alpha

0.376

CNOT1_HUMAN

CCR4-NOT transcription complex subunit 1

0.377

VA0D1_HUMAN

V-type proton ATPase subunit d 1

0.381

RPF2_HUMAN

Ribosome production factor 2 homolog

0.381

COPB_HUMAN

Coatomer subunit beta

0.381

VATH_HUMAN

V-type proton ATPase subunit H

0.383

NIP7_HUMAN

60S ribosome subunit biogenesis protein NIP7 homolog

0.384

PSB4_HUMAN

Proteasome subunit beta type-4

0.384

SP16H_HUMAN

FACT complex subunit SPT16

0.384

RACK1_HUMAN

Receptor of activated protein C kinase 1

0.384

H4_HUMAN

Histone H4

0.384

SSRP1_HUMAN

FACT complex subunit SSRP1

0.385

DIEXF_HUMAN

Digestive organ expansion factor homolog

0.386

BRX1_HUMAN

Ribosome biogenesis protein BRX1 homolog

0.388

RAN_HUMAN

GTP-binding nuclear protein Ran

0.388

PSMD3_HUMAN

26S proteasome non-ATPase regulatory subunit 3

0.389

NSF_HUMAN

Vesicle-fusing ATPase

0.389

PTPA_HUMAN

Serine/threonine-protein phosphatase 2A activator

0.389

RBM19_HUMAN

Probable RNA-binding protein 19

0.389

UBP5_HUMAN

Ubiquitin carboxyl-terminal hydrolase 5

0.389

CDC5L_HUMAN

Cell division cycle 5-like protein

0.389

CNOT7_HUMAN

CCR4-NOT transcription complex subunit 7

0.389

PAPOG_HUMAN

Poly(A) polymerase gamma

0.389

EIF3I_HUMAN

Eukaryotic translation initiation factor 3 subunit I

0.389

CNOT8_HUMAN

CCR4-NOT transcription complex subunit 8

0.390

RL6_HUMAN

60S ribosomal protein L6

0.390

COPD_HUMAN

Coatomer subunit delta

0.390

YETS4_HUMAN

YEATS domain-containing protein 4

0.392

BOP1_HUMAN

Ribosome biogenesis protein BOP1

0.392

PSA1_HUMAN

Proteasome subunit alpha type-1

0.392

LPIN1_HUMAN

Phosphatidate phosphatase LPIN1

0.392

LPIN2_HUMAN

Phosphatidate phosphatase LPIN2

0.392

SPT6H_HUMAN

Transcription elongation factor SPT6

0.393

IF4G3_HUMAN

Eukaryotic translation initiation factor 4 gamma 3

0.393

TCPD_HUMAN

T-complex protein 1 subunit delta

0.393

BUD31_HUMAN

Protein BUD31 homolog

0.394

NMD3_HUMAN

60S ribosomal export protein NMD3

0.395

COPB2_HUMAN

Coatomer subunit beta

0.396

PSMD6_HUMAN

26S proteasome non-ATPase regulatory subunit 6

0.396

DERL2_HUMAN

Derlin-2

0.396

CSK21_HUMAN

Casein kinase II subunit alpha

0.397

DNM1L_HUMAN

Dynamin-1-like protein

0.397

PSD12_HUMAN

26S proteasome non-ATPase regulatory subunit 12

0.397

PSMD2_HUMAN

26S proteasome non-ATPase regulatory subunit 2

0.397

GDIA_HUMAN

Rab GDP dissociation inhibitor alpha

0.397

XPO1_HUMAN

Exportin-1

0.397

NMT1_HUMAN

Glycylpeptide N-tetradecanoyltransferase 1

0.398

CRNL1_HUMAN

Crooked neck-like protein 1

0.398

YKT6_HUMAN

Synaptobrevin homolog YKT6

0.398

SF3B1_HUMAN

Splicing factor 3B subunit 1

0.398

EIF3B_HUMAN

Eukaryotic translation initiation factor 3 subunit B

0.398

SC24B_HUMAN

Protein transport protein Sec24B

0.398

TBB4B_HUMAN

Tubulin beta-4B chain

0.398

SSF1_HUMAN

Suppressor of SWI4 1 homolog

0.399

SMD3_HUMAN

Small nuclear ribonucleoprotein Sm D3

0.399

LSM7_HUMAN

U6 snRNA-associated Sm-like protein LSm7

0.399

RL27_HUMAN

60S ribosomal protein L27

0.399

SENP1_HUMAN

Sentrin-specific protease 1

0.399

Proteins with similar distribution in Eukaryota

Identifier

Description

Distance between phylogenetic profiles

RUXGL_HUMAN

Putative small nuclear ribonucleoprotein G-like protein 15

0.275

PAPOA_HUMAN

Poly(A) polymerase alpha

0.376

CNOT1_HUMAN

CCR4-NOT transcription complex subunit 1

0.377

VA0D1_HUMAN

V-type proton ATPase subunit d 1

0.381

RPF2_HUMAN

Ribosome production factor 2 homolog

0.381

COPB_HUMAN

Coatomer subunit beta

0.381

VATH_HUMAN

V-type proton ATPase subunit H

0.383

NIP7_HUMAN

60S ribosome subunit biogenesis protein NIP7 homolog

0.384

PSB4_HUMAN

Proteasome subunit beta type-4

0.384

SP16H_HUMAN

FACT complex subunit SPT16

0.384

RACK1_HUMAN

Receptor of activated protein C kinase 1

0.384

H4_HUMAN

Histone H4

0.384

SSRP1_HUMAN

FACT complex subunit SSRP1

0.385

DIEXF_HUMAN

Digestive organ expansion factor homolog

0.386

BRX1_HUMAN

Ribosome biogenesis protein BRX1 homolog

0.388

RAN_HUMAN

GTP-binding nuclear protein Ran

0.388

PSMD3_HUMAN

26S proteasome non-ATPase regulatory subunit 3

0.389

NSF_HUMAN

Vesicle-fusing ATPase

0.389

PTPA_HUMAN

Serine/threonine-protein phosphatase 2A activator

0.389

RBM19_HUMAN

Probable RNA-binding protein 19

0.389

UBP5_HUMAN

Ubiquitin carboxyl-terminal hydrolase 5

0.389

CDC5L_HUMAN

Cell division cycle 5-like protein

0.389

CNOT7_HUMAN

CCR4-NOT transcription complex subunit 7

0.389

PAPOG_HUMAN

Poly(A) polymerase gamma

0.389

EIF3I_HUMAN

Eukaryotic translation initiation factor 3 subunit I

0.389

CNOT8_HUMAN

CCR4-NOT transcription complex subunit 8

0.390

RL6_HUMAN

60S ribosomal protein L6

0.390

COPD_HUMAN

Coatomer subunit delta

0.390

YETS4_HUMAN

YEATS domain-containing protein 4

0.392

BOP1_HUMAN

Ribosome biogenesis protein BOP1

0.392

PSA1_HUMAN

Proteasome subunit alpha type-1

0.392

LPIN1_HUMAN

Phosphatidate phosphatase LPIN1

0.392

LPIN2_HUMAN

Phosphatidate phosphatase LPIN2

0.392

SPT6H_HUMAN

Transcription elongation factor SPT6

0.393

IF4G3_HUMAN

Eukaryotic translation initiation factor 4 gamma 3

0.393

TCPD_HUMAN

T-complex protein 1 subunit delta

0.393

BUD31_HUMAN

Protein BUD31 homolog

0.394

NMD3_HUMAN

60S ribosomal export protein NMD3

0.395

COPB2_HUMAN

Coatomer subunit beta

0.396

PSMD6_HUMAN

26S proteasome non-ATPase regulatory subunit 6

0.396

DERL2_HUMAN

Derlin-2

0.396

CSK21_HUMAN

Casein kinase II subunit alpha

0.397

DNM1L_HUMAN

Dynamin-1-like protein

0.397

PSD12_HUMAN

26S proteasome non-ATPase regulatory subunit 12

0.397

PSMD2_HUMAN

26S proteasome non-ATPase regulatory subunit 2

0.397

GDIA_HUMAN

Rab GDP dissociation inhibitor alpha

0.397

XPO1_HUMAN

Exportin-1

0.397

NMT1_HUMAN

Glycylpeptide N-tetradecanoyltransferase 1

0.398

CRNL1_HUMAN

Crooked neck-like protein 1

0.398

YKT6_HUMAN

Synaptobrevin homolog YKT6

0.398

SF3B1_HUMAN

Splicing factor 3B subunit 1

0.398

EIF3B_HUMAN

Eukaryotic translation initiation factor 3 subunit B

0.398

SC24B_HUMAN

Protein transport protein Sec24B

0.398

TBB4B_HUMAN

Tubulin beta-4B chain

0.398

SSF1_HUMAN

Suppressor of SWI4 1 homolog

0.399

SMD3_HUMAN

Small nuclear ribonucleoprotein Sm D3

0.399

LSM7_HUMAN

U6 snRNA-associated Sm-like protein LSm7

0.399

RL27_HUMAN

60S ribosomal protein L27

0.399

SENP1_HUMAN

Sentrin-specific protease 1

0.399

Orthologs and taxonomic distribution

Eukaryota: Model Organisms
Eukaryota: Whole domain
Three domains

Orthologs found in 145 organisms (of 369)

Taxonomic distribution summary

Help

This section gives an overview of the taxonomic distribution of orthologs in representative clades. Clade names correspond to NCBI taxonomy or to the accepted consensus. Classification of each species into clade is available here

Legend:

Heatmap

Each labelled tile corresponds to a clade and is colored according to the proportion of species in the clade with at least one ortholog using the following scale:

25%

50%

75%

100%

Hover on the heatmap to see the total number of species in which orthologs were found.

Tiles framed in blue indicate the clade for which a 'focused' view is available, you can click the tile to reveal it

Labels

Label colors correspond to one of three domains of Life

Eukaryota

Archaea

Bacteria

Inparalogs

When inparalogs (genes in query species resulting from a duplication event posterior to the speciation with target species) are detected, they can be displayed under the 'See Inparalogs' button. A indicates that this protein is a predicted inparalog to the query protein, relatively to (at least) one species of this clade.

Not found in

The 'Not found in' button offers the list of species in which orthologs where not found, ordered clade by clade

See inparalogs

Orthologs not found in

	Relationship type	Query & inparalogs	Orthologs	Orthologs length	Species	Taxid		Taxonomy	Whole Taxonomy